Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00738
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    30   0.40 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    27   2.1  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    27   2.8  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   4.9  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    26   6.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.4  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   6.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   8.5  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   8.5  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.5  

>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 8   PRVSSAPSGPMNSEYSIQYHPYEQYEQMYKTEDPYVHYPEQPKTEYDTGGSYFS 169
           PR+ +    P+++++  +   +E+ E   + E   V YP +  TE +T   Y S
Sbjct: 414 PRIHAGTGSPVSTQHWGELEEFEEEESSEEEESEDVEYPTEEITERETIEEYQS 467


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 42  TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTP 152
           TL TA+ + PT  +NR  + KT   T   S K  TTP
Sbjct: 287 TLRTANGSEPTKKSNRSEQSKTVANTNVGS-KNGTTP 322


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 27  PAAP*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTPAV 158
           P +  + +T SN +PT +T+  T    P     SSL    TP V
Sbjct: 152 PTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTV 195


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 215 PRSEIRTGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNA 343
           P    +T   D   T  S +  +   +RVLWINT  +D++  A
Sbjct: 744 PNKSNKTYDGDLRITDISVVKATHLGERVLWINTVQSDSTIKA 786


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 277 YFNHGAESAMDQHQQYR--YEQQCYR--PVYCPEQAPEPEYCTERMYPPYASVI 426
           Y +  +E++ + H++++    +QC +  P YCP     P  C   + PP+ S +
Sbjct: 255 YLSSASETSGNSHKKFKPLTIRQCLKALPFYCPSSLILPTVCYVSL-PPFVSSV 307


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 262 REFDKYFNHGAESAMDQHQQYRYEQQCYRPVYCPEQAPEPEY 387
           +EF  Y N+      D    Y Y ++ +R ++C  Q+ E +Y
Sbjct: 248 QEFSIYLNYTRSLRFDDKPDYAYLRKLFRDLFC-RQSYEFDY 288


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 515 PTDLLQQLTITELIELRNSEDIFNVAQRI 601
           P+DL  +LTI +L  +    + F++  R+
Sbjct: 115 PSDLTNELTILDLFHVPRPNETFDITDRV 143


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 17  SSAPSGPMNSEYSIQYHPYEQYEQMYKTEDPYVHYPEQ 130
           +SAPS  M S+ ++   PY+ Y  +    DP  + P+Q
Sbjct: 559 ASAPSPHMQSQQAL---PYQYYNPLPAMADPAQNVPQQ 593


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 14  VSSAPSGPMNSEYSIQYHPYEQYEQMY 94
           VS   S  +NS+YS  +  YE Y  +Y
Sbjct: 449 VSYNSSRVLNSDYSFNHTKYESYSPLY 475


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 11  RVSSAPSGP-MNSEYSIQYHPYEQYEQMYKTEDPYVHYPEQPKT 139
           + S+AP+   +N ++S +Y P+ QY+       P V+    P T
Sbjct: 224 QASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNCENFPTT 267


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 451 HTSRAEYRLSPMRTGGTSSRYSIPVPALVPDS 356
           HTS ++  LSPM +  +SS  + PV    P +
Sbjct: 294 HTSASQVSLSPMASTASSSVTNSPVDTHTPST 325


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 233 TGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
           + SP S +T  SS ++ ITA  V   N   + ++NN+I
Sbjct: 75  SSSPSSTSTSSSSGTSVITASDVSASNEIISSSTNNSI 112


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 184 ESSTGGRIHESSFRNK 231
           +++TGGR+  SSFR+K
Sbjct: 479 DAATGGRVSSSSFRDK 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,559
Number of Sequences: 5004
Number of extensions: 50039
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)