Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00738
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234...    35   0.078

>11_01_0315 -
           2347254-2347345,2347485-2347895,2348182-2349633,
           2349688-2350045,2350818-2351177,2351321-2351419,
           2351856-2351948,2352078-2352215,2352389-2352476,
           2352682-2352770,2353113-2353178,2353370-2353481,
           2354702-2354901
          Length = 1185

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 247 LRRDTREFDKYFNHGAESAMDQHQQYRYEQQCYRPVYCPEQAPEP 381
           L RD +     F H  E A+D   +Y +  QCY  V+C  QA +P
Sbjct: 109 LSRDAKARKLAFQHWIE-AIDPRHRYGHNLQCYYDVWCQSQAGQP 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,911,351
Number of Sequences: 37544
Number of extensions: 348820
Number of successful extensions: 1053
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)