Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00738
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 31 0.97
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 3.9
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 29 5.2
SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07) 29 5.2
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 5.2
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 6.9
SB_48578| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 28 9.1
SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36) 28 9.1
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10) 28 9.1
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 310 QHQQYRYEQQCYRPVYCPEQAPEPEYCTERMY 405
Q+Q + E R +YCPE EP YC Y
Sbjct: 3180 QYQPNKKESHVKRVLYCPEGTIEPVYCPNGTY 3211
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 209 MNPRSEIRTGS---PDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
++P S + G+ P+S A+PG ++++ IT R + + STD+ + +
Sbjct: 772 VSPESTLTPGTTVLPESTASPGITVASEITVTRGTTVASESTDSESTIV 820
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 242 PDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
P+S A+PG+++++ IT R + + STD+ + +
Sbjct: 959 PESTASPGTTVASEITVTRGTTVASESTDSESTIV 993
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 242 PDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
P+S A+PG+++++ IT R + + STD+ + +
Sbjct: 1348 PESTASPGTTVASEITVTRGTTVASESTDSESTIV 1382
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 233 TGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
T +P+S A PG+++++ T R + ++STD +
Sbjct: 603 TLAPESTAAPGTTVASESTVTRGATVASASTDAQGTTV 640
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 233 TGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
T SP+S PG+++++ IT R + + ST +S +
Sbjct: 419 TLSPESTVAPGTTVASEITVTRGTTVASDSTFSSGTTL 456
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 242 PDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
P+S A+PG+++++ IT + + + STD+ + +
Sbjct: 553 PESTASPGTTVASEITVTQGNTVASESTDSESTIV 587
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +1
Query: 169 GRTSAESSTGGRIHESSFRNKDGISRLRRDTREFDKYFNHGAESAMDQHQQYRYEQQCYR 348
G+ + S G+ H+ FR + + R + + F ++ HQ + QQ +R
Sbjct: 583 GQQPQQPSRPGQQHQQPFRPEQQPQQPFRSVQPPQQPFRADQQTQQPFHQPGQQPQQSFR 642
Query: 349 PVYCPEQAPEPEYCTERMYPP 411
P P+Q PE +++ P
Sbjct: 643 PGQQPQQPFRPEQQSQQSSRP 663
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 328 YEQQCYRPVYCPEQAPEPEYCTERMYPPY 414
Y C YCPE P P C + Y PY
Sbjct: 2017 YGTDCPNGTYCPEGTPIPVPCPKGSYNPY 2045
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 217 SFRNKDGISRLRRDTREFDKYFNHGAESAMDQHQQYRYE 333
S R DG+ R D+ F ++ GAE+A +HQQ +E
Sbjct: 77 SLRASDGVPNGRFDSH-FQRFLYDGAETAAPRHQQIIHE 114
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 738 VSKMVLRSSHSKAIKRNTERSLLLDYHSL 652
VS+M+ +S +K RNT+++L LDY+ +
Sbjct: 658 VSQMIDIASRAKTASRNTDKALGLDYYEM 686
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 2 STPRVSSAPSGPMNSEYSIQYHPYEQYEQMYKTEDPYVHYPEQPKTEYDTGGSYFS 169
S P VSS P+GP Y YE+ E++ ++ +P K + +T G YF+
Sbjct: 557 SDPTVSSDPTGPKTKFYDDDDCDYEEVEEVLYCKNNVCVHPSTGK-DKETAG-YFT 610
>SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1078
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 243 QTPTRH--QGVR*VLQSRRRECYGSTPAVQIRATMLSAGLLSGTSAGT 380
QTP R +G+R L S + YGS P V T AGL+ +S+ +
Sbjct: 542 QTPVRKLSRGLRTSLSSSQLSAYGSNPQVPGHQTNSPAGLMHYSSSSS 589
>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
Length = 585
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 209 MNPRSEIRTGS---PDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
++P S + G+ P+S PG ++++ IT R + + STD+ + +
Sbjct: 196 VSPESTLTPGTTVLPESTVAPGIAVASEITVTRGTTVASESTDSESTIV 244
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 233 TGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
T SP+S PG+++++ IT R + + ST +S +
Sbjct: 391 TLSPESTVAPGTTVASEITVTRGTTVASDSTFSSGTTL 428
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 172 RTSAESSTGGRIHESSFRNKDGISRLRRDTREFDKYFNHGAESAMDQHQQ 321
+TS GR+ ++ ++ + LR + + FNH + A D H Q
Sbjct: 698 KTSEAEHNNGRLRKTISELENNLYALRNKHVQMENQFNHTFDEASDLHSQ 747
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 PHACLRRPAAP*TLNTASNTIPTNNTNRC-TKLKTPTYTTRSSLKPNTTP 152
PH P P T + T PT TN TPT T ++ TTP
Sbjct: 40 PHNRTTTPTTPTTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTP 89
>SB_48578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 48 NTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTT 149
N+ +NT N+ T+ + T TTR++ PNTT
Sbjct: 3 NSPTNTTRHNSLTNTTRHNSLTNTTRNNSLPNTT 36
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 427 LSPMRTGGTSSRYSIPVPALVPDSKPAD 344
+S + G T++ Y +P+PA+ P P++
Sbjct: 525 MSSLPLGHTTAHYQVPIPAVAPAVTPSE 552
>SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36)
Length = 380
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 262 REFDKYFNHGAESAMDQHQQYR 327
R ++ +HG +S +D+H QYR
Sbjct: 97 RRIEQLLDHGVDSFVDKHDQYR 118
>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
Length = 296
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 48 NTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTT 149
N+ +NT N+ + K+PT TTR + PN T
Sbjct: 124 NSLTNTTRHNSLPNTARHKSPTNTTRHNSLPNIT 157
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 27 PAAP*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTPA 155
PA+P ++ + PT+ T+ T TP +RS + +TP+
Sbjct: 182 PASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPS 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,746,973
Number of Sequences: 59808
Number of extensions: 397110
Number of successful extensions: 1582
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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