Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00738
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 31 0.64
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 4.5
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 4.5
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 4.5
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF078787-3|AAC26951.1| 335|Caenorhabditis elegans Hypothetical ... 28 6.0
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 28 7.9
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.9
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 7.9
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 283 NHGAESAMDQHQQYRYEQQCYRPVYCPEQAPEPEYCTERMYPPY 414
NH A A + QQ + Q PVY P P P+ +RM PY
Sbjct: 157 NHQAYQAQMRQQQQQPNGQAPPPVYPPFGQPAPQMSGQRMPYPY 200
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +3
Query: 6 PHACLRRPAAP*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTT 149
P P T T + T PT T T T T TT ++ P TT
Sbjct: 81 PTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTT 128
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 36 P*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTP 152
P T T + T PT T T TPT TT + TTP
Sbjct: 132 PTTTTTETTTTPTTTTTETTT--TPTTTTTTPTTTTTTP 168
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +3
Query: 6 PHACLRRPAAP*TLNTASNTIPTNNTN-RCTKLKTPTYTTRSSLKPNTT 149
P P T T + T PT T T TPT TT ++ P TT
Sbjct: 189 PTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTT 237
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 42 TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTT 149
T + T P T+ T TPT TT+++ KP TT
Sbjct: 238 TTTPTTTTTPATTTSETTTT-TPTTTTQTTTKPTTT 272
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 36 P*TLNTASNTIPTNNTNR-CTKLKTPTYTTRSSLKPNTTP 152
P T T + T PT T T TPT TT + TTP
Sbjct: 143 PTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTP 182
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 PHACLRRPAAP*TLNTASNTIPTNNTNR-CTKLKTPTYTTRSSLKPNTTP 152
P P T T + T PT T T TPT TT + TTP
Sbjct: 154 PTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTP 203
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 36 P*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTP 152
P T T + T T T T TPT TT + TTP
Sbjct: 85 PSTTTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTP 123
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 33 AP*TLNTASNT-IPTNNTNRCTKLKTPTYTTRSSLKPNTT 149
AP T TAS T T T+ TPT TT ++ KP TT
Sbjct: 318 APTTTTTASTTTFKTTTITTTTQTTTPT-TTATTTKPTTT 356
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 36 P*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTP 152
P T + + T T T T TP TT S++ P T P
Sbjct: 686 PTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRP 724
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 36 P*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTP 152
P T + + T T T T TP TT S++ P T P
Sbjct: 742 PTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRP 780
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 36 P*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTTP 152
P T + + T T T T TP TT S++ P T P
Sbjct: 565 PTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRP 603
>AF078787-3|AAC26951.1| 335|Caenorhabditis elegans Hypothetical
protein T17A3.4 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 681 RSLLLDYHSLHLQESHFVV 625
R L LDYHSL QE H +V
Sbjct: 184 RELALDYHSLKPQEFHLIV 202
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +3
Query: 3 QPHACLRRPAAP*TLNTASNTIPTNNTNRCTKLKTPTYTTRSSLKPNTT 149
+P P T +T + T PT T T T +T ++ P TT
Sbjct: 57 EPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTT 105
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 209 MNPRSEIRTGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
MNP S TGS S TP S ++S T + ++ TS + +
Sbjct: 417 MNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTV 462
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 209 MNPRSEIRTGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
MNP S TGS S TP S ++S T + ++ TS + +
Sbjct: 624 MNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTV 669
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 209 MNPRSEIRTGSPDSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
MNP S TGS S TP S ++S T + ++ TS + +
Sbjct: 624 MNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEVTSQSTV 669
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,380
Number of Sequences: 27780
Number of extensions: 292052
Number of successful extensions: 1087
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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