Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00738
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77060.1 68414.m08972 mutase family protein similar to carbox...    30   1.8  
At5g55507.1 68418.m06913 hydroxyproline-rich glycoprotein family...    29   2.4  
At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family prot...    29   2.4  
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR...    29   2.4  
At5g53360.1 68418.m06631 seven in absentia (SINA) family protein...    29   4.3  
At3g13222.1 68416.m01655 expressed protein                             29   4.3  
At2g41420.1 68415.m05111 proline-rich family protein contains pr...    29   4.3  
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    28   5.6  
At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containi...    28   5.6  
At2g15730.1 68415.m01801 expressed protein                             28   7.4  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    27   9.8  

>At1g77060.1 68414.m08972 mutase family protein similar to
           carboxyvinyl-carboxyphosphonate phosphorylmutase
           GB:O49290 from [Arabidopsis thaliana]; similar to
           carboxyphosphonoenolpyruvate mutase (GI:47149)
           [Streptomyces hygroscopicus]; contains Prosite PS00161:
           Isocitrate lyase signature
          Length = 339

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 300 CYGSTPAVQIRATMLSAGLLSGTSAGTGILYREDVPPVRIGDNRYSARDVCS 455
           CY +  A  ++ T  SAG +SG +    +L + D   +   +   +AR VC+
Sbjct: 60  CYDALSAAIVQQTGFSAGFISGYALSASLLGKPDFGLLTPPEMAATARSVCA 111


>At5g55507.1 68418.m06913 hydroxyproline-rich glycoprotein family
           protein supported by full-length cDNA (cDNA confirms
           gene suggested by AE93TR-Brassica genomic sequence
           alignment) Awaiting Genbank accession.
          Length = 91

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 20  SAPSGPMNSEYSIQYHPYEQYEQMYKTEDPYVHYP 124
           SAP  PM+   + Q  PY + +Q   T  PY +YP
Sbjct: 29  SAPMSPMSQYMNYQQFPYTEQQQPPATY-PYYYYP 62


>At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00657 Lipase
           Acylhydrolase with GDSL-like motif
          Length = 353

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 220 FRNKDGISRLRRDTREFDKYFNHGAESAMDQHQQYRYEQ-QCYRPVYCPEQAPEPEYCTE 396
           F  K  +SRL  D + F+K  N  A     Q+   +      Y P+Y   Q P     TE
Sbjct: 233 FHEKGCVSRLNTDAQNFNKKLNAAASKLQKQYSDLKIVVFDIYSPLYDLVQNPSKSGFTE 292


>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 136  NRIRHRR*LFLGRTSAESSTGGRIHESSFRNKDGIS 243
            N +R+   L LG+ + ES  GG +HE S R  D ++
Sbjct: 1072 NIVRNMGKLVLGKETTESIDGGVLHEYSTRKDDDVT 1107


>At5g53360.1 68418.m06631 seven in absentia (SINA) family protein
           low similarity to siah-1A protein [Mus musculus]
           GI:297035; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 233

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 274 KYFNHGAESAMDQHQQYRYEQQC-YRPVYCPEQAPE 378
           KY+N G       + + ++E QC +RP  CP    E
Sbjct: 29  KYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSE 64


>At3g13222.1 68416.m01655 expressed protein
          Length = 567

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 47  EYSIQYHPYEQYEQMYKTEDPYVH 118
           +YS+ Y PY  Y   Y    PY+H
Sbjct: 388 QYSLNYFPYGPYFPPYYMPQPYIH 411


>At2g41420.1 68415.m05111 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 98

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 313 HQQYRYEQQCYRPVYCPEQAPEPEYCTERMYPPY 414
           + Q  Y QQ Y P Y P+  P P++  ++  P +
Sbjct: 47  YPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGF 80


>At2g03140.1 68415.m00267 CAAX amino terminal protease family
           protein very low similarity to SP|Q40863 Late
           embryogenesis abundant protein EMB8 from Picea glauca;
           contains Pfam profile PF02517 CAAX amino terminal
           protease family protein
          Length = 1805

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 245 DSDATPGSSISTSITAQRVLWINTSSTDTSNNAI 346
           DSD TP S++S     ++ + I+  S +T NN +
Sbjct: 530 DSDMTPNSNLSPETDLEKNVKIDYGSDETENNIV 563


>At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (8 copies at C-terminal half of protein)
          Length = 650

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
 Frame = +1

Query: 169 GRTSAESSTGGRIHESSFRNKDGISRLRRDTREFDKYFNHGAESAMDQHQQYRYEQQCYR 348
           G  S  SS  G    S + N   I   R   RE+  Y          +HQ YR       
Sbjct: 215 GWPSYSSSNSGT---SPYNNGQEIFENRGGMREYSAYSPPHQPEVSYKHQNYRTTTSDIL 271

Query: 349 PVYCPE-QAPEPEYCTE 396
           P++C   Q P    C+E
Sbjct: 272 PLFCQRTQVPMVSKCSE 288


>At2g15730.1 68415.m01801 expressed protein
          Length = 249

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 107 PYVHYPEQPKTEYDTGGSYFS 169
           PYVHYP +PKT   + G  FS
Sbjct: 77  PYVHYP-KPKTYSSSNGEIFS 96


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 53  SIQYHPYEQYEQMYKTEDP-YVHY 121
           +++Y PYE+Y      EDP YV Y
Sbjct: 146 AVKYVPYEEYRNFLSKEDPAYVPY 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,407
Number of Sequences: 28952
Number of extensions: 262798
Number of successful extensions: 802
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)