Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00737
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 103 2e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 56 3e-09
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 45 1e-05
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 38 0.002
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 34 0.021
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.34
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 30 0.34
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.77
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 7.2
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 7.2
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 7.2
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 103 bits (247), Expect = 2e-23
Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 AAVSKTAVAQIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 431
AAVSKTA A IERVKLL+Q Q + + RYKGI + F R E+G++S WRGN AN
Sbjct: 38 AAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTAN 97
Query: 432 VIRYFPTQALNFAFKDKYKQVF 497
V+RYFPTQALNFAFKDK+K++F
Sbjct: 98 VLRYFPTQALNFAFKDKFKKMF 119
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +3
Query: 258 AVSKTAVAQIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 437
A S V ++ + L S + ++++ G+VD + + + GL +RG +V+
Sbjct: 144 AASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVV 203
Query: 438 RYFPTQALNFAFKDKYKQVFLGG 506
+ L F D K V L G
Sbjct: 204 GIVVYRGLYFGMYDTLKPVVLVG 226
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 578 SLCFVYPLDFARTRLAAD 631
SL FVY LD+ARTRLA D
Sbjct: 146 SLLFVYSLDYARTRLAND 163
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 56.4 bits (130), Expect = 3e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +3
Query: 255 AAVSKTAVAQIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
A VS+TAV+ +ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N
Sbjct: 31 ATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNC 83
Query: 435 IRYFPTQALNFAFKDKYKQ 491
+R FP A+ FA + KQ
Sbjct: 84 LRAFPYGAVQFATFNMLKQ 102
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 351 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 467
YK I A I K +G+ F+RG +N+++ P ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +3
Query: 261 VSKTAVAQIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
V+K+ VA ++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 441 YFPTQALNFAFKDKYKQVFL 500
FP + F ++ ++V +
Sbjct: 89 VFPYAGIKFVAYEQVRRVLI 108
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 273 AVAQIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 443
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 444 FPTQALNFAFKDKYKQVFLGGVTRRRSSGVTSLV 545
P +AL FA D Y +++ R+ SS S++
Sbjct: 76 APKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 348 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYK 488
+Y G VD F +I K++ +L+ + G A + R+ A F K +
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIR 186
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 590 VYPLDFARTRLAADVGKGD 646
+YPLD +TR+ VGK D
Sbjct: 26 LYPLDVVKTRMQLSVGKSD 44
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = +3
Query: 270 TAVAQIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
T V + ++ LQ Q S A Y G +D F + K +G ++G N+++ P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407
Query: 450 TQALNFAFKDKYKQ 491
+ A+++ + K+
Sbjct: 408 SVAISYLVYENCKK 421
Score = 26.6 bits (56), Expect = 3.1
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +3
Query: 237 PGWRYLAAVSKTAVAQ-----IERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQG 398
P + YLA +VAQ ++ +K +Q +S+ Q K I+ + + + K G
Sbjct: 228 PLYSYLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVG 283
Query: 399 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVTRR 518
+ ++RG ++ FP A + + K+ ++G + R
Sbjct: 284 IRGYYRGVLVGILGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 324 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 467
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 327 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 494
+ ++A + YK + +I + GLL FW G + R + + F +K ++
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.77
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 336 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +3
Query: 264 SKTAVAQIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 434
S VA ++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 435 IRYFPTQALNFAFKDKYKQVFLGGVTRRRSS 527
+ Y P+ ++ F +K K +F GV ++ +S
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF--GVNKKYTS 107
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 72 YEITPNLLFKNQELVFRDPPSACAATPTSTY 164
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 641 PYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRS 534
P R R RD RS +RS R HR DY RS
Sbjct: 145 PVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 467 RLQGQVQAGVPRRRDKKTQFWRYFXXXXXXXXXXXXTSLCF--VYPLDFART 616
RLQ Q A +P + +FWR F TS+ F P DFA T
Sbjct: 7 RLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVT 58
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 360 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 452
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 376 TKASTIPL*RWSAAICLLTCCTWSSSLTRSICATAV 269
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,548
Number of Sequences: 5004
Number of extensions: 47905
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -