Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00736
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 69 9e-13
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 48 1e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 5e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 41 2e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 41 2e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 41 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 3e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 6e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 38 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.005
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.005
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 35 0.011
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.014
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 34 0.018
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.018
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.024
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.042
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.042
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.056
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.074
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 32 0.074
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.13
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.23
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.69
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.91
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.91
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 27 2.1
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 2.8
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 27 2.8
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 27 3.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.9
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 4.9
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 6.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 6.4
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 26 6.4
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 25 8.5
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 8.5
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 25 8.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 68.5 bits (160), Expect = 9e-13
Identities = 33/88 (37%), Positives = 52/88 (59%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKPIWLMKLKII 297
K+FIGGL++ TTD SL++++EQ+GE++D VM+D T RS+GFGF+ P
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP--------- 214
Query: 298 GLTKLTEELSSQNEQFQGKRLKDQKLVP 381
K E+ S+ GK + ++ +P
Sbjct: 215 ---KCVNEVMSKEHHLDGKIIDPKRAIP 239
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEED 434
T+ V+E + + H +DG+I++PKRA+PREE ++ K+FV G+ D EE+
Sbjct: 210 TFKNPKCVNEVMS-KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEE 262
Query: 435 LREYFSTFGNIVSVSVVTDKETGK 506
R +F+ FG ++ +++ DK+TG+
Sbjct: 263 FRNFFNQFGRVLDATLMMDKDTGR 286
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
EE E T K+F+GG+ T+ + F+ Q+G ++D +M D T R +GFGF+
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFV 293
Score = 39.9 bits (89), Expect = 4e-04
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
K+F+ GL + ++ LR+YF FG ++ +V+ D TG+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
LF+G LD+ TTD+ LKE + Q G+I V +M T + KGFGF+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274
Score = 32.3 bits (70), Expect = 0.074
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
LFV L + + DL+E+F G I V ++T ++TGK
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGK 267
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 2e-05
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
LF+ G+ R + L++ + ++G + V +M++P TK S+GFGF+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFL 147
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 348 REEIKRPEASATV-KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
+E PE S + LFV+G+ ++E++L++ FS FG + V ++ + T
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +1
Query: 70 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 249
+P++ ++ T +F+G L + D L + +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 250 FIHILKP 270
++ P
Sbjct: 308 YVDFETP 314
Score = 42.3 bits (95), Expect = 7e-05
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 85 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
GD EP T +F+G L + T+ L + G+I + + DP++ R KGFG++
Sbjct: 358 GDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV 412
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 103 PEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKPIWL 279
P+ T++ +F+G L + + L ++ G I V +++DPKT KGF +I + +
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 280 MKLKIIGLTKLTE 318
K ++ K+ E
Sbjct: 325 DKALLLNEKKMPE 337
Score = 33.1 bits (72), Expect = 0.042
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 351 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
+ + P T + +FV L + EEE L YF G+I V +V D +T
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKT 307
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 70 KPSESGDDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
+P E E E R+ +F+ L R T L +F+EQ G + D +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 247 GFI 255
++
Sbjct: 284 AYV 286
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKPI 273
E P H +L + + + TD +K +E +G+I V + +D + RSKGFG+I PI
Sbjct: 336 EIPFH--RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPI 391
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 351 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
E + A +L V+ + ++ +ED++ F FG+I V + D + KG
Sbjct: 328 ELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKG 381
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 KPSESG--DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
KP S DY + + ++IG LD+ + + + ++GE VD+ +++D +T +SKG
Sbjct: 17 KPFSSSWHQDYSDSAY---IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKG 73
Query: 244 FGFI 255
F F+
Sbjct: 74 FAFL 77
Score = 38.7 bits (86), Expect = 9e-04
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+++ L D+ E+D+ FS FG V +++V DKETGK
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGK 70
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
LFV L ++EDL FS FG I+S V+ DKETG
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETG 282
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.1 bits (87), Expect = 6e-04
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
LF+ L+ ++++E L+ FS FG I S ++TD++ KG
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKG 405
Score = 35.9 bits (79), Expect = 0.006
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIH 258
L++G LD T++ L E + G + + V +D T+RS G+ +++
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIH 258
++I LD T+ + + Q+GEI + ++KD K +GFGF++
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVN 307
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
L V L D EE+LR+ F FG I V + DKETG+
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGR 241
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 79 ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
ESGD E + + L + L T + L++ + ++G I V + KD +T R+KGF F
Sbjct: 188 ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
Query: 253 I 255
+
Sbjct: 248 V 248
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
LF+ L ++T L F+ G I VV+ +P+T ++G+GF+
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFV 51
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+ L + T+ L + Q+G + ++KDP T RS G GFI
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFI 323
Score = 32.3 bits (70), Expect = 0.074
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
LFV L +++DL +FS G I VVT+ ETG+
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGE 44
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHIL 264
E+ +++G LD + TDS L E Q G +V++ + +D GFGF L
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFL 60
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
LF+G LD + L + + G++V + + RSKG+GF+
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFV 145
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
+E + +++G +DY T L+ + G + V ++ D T KGF +I +P
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
+F+G + Y ++ + E + Q G + ++ DP+T KG+GF
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGF 52
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.1 bits (77), Expect = 0.011
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 67 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
M + E TR ++I GL T+D +L + ++G++ + D +T KG+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 247 GF 252
GF
Sbjct: 340 GF 341
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.7 bits (76), Expect = 0.014
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
+LFV L D+ +E L + FS + ++V VV D+E +G
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRG 71
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+++G L + T+D +L + + G ++ + +P T RSKGFG +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVV 325
Score = 31.1 bits (67), Expect = 0.17
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 82 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+G Y + E R++++G L Y+ LKEF Q G +++ ++ P SKG I
Sbjct: 57 NGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAII 111
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.3 bits (75), Expect = 0.018
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK-PIWLMKLKII 297
+++G L + TT+ + + + GEI +++ D TK GF F+ + L LK I
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 298 GLTKLTEEL 324
T L E +
Sbjct: 94 SRTSLDERI 102
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.9 bits (74), Expect = 0.024
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +1
Query: 127 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+G L + T++ L +F+ + + +V+ DP T+RS+GFG++
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYV 138
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.1 bits (72), Expect = 0.042
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 351 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
E+ + + + K+LF+ L E+DL+ F FG + V + DK+T
Sbjct: 311 EQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKT 360
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.1 bits (72), Expect = 0.042
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+FV GL + + EE+L+ F FG IV V + K G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCG 341
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHIL 264
+F+GGL ++ LK ++ +GEIV V K KG GF+ +
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFV 346
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L + + F ++ +M DP+T S+G+GF+
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFV 233
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.7 bits (71), Expect = 0.056
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ + P
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
Score = 32.7 bits (71), Expect = 0.056
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 509
LFV L +D E L+ +F G + SV + TDK +G++
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQ 132
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.3 bits (70), Expect = 0.074
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 121 LFIGGLDYRTTDSS--LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
LF+ LD ++ L+E + ++G I + P T+ SKG+GF+ P
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.3 bits (70), Expect = 0.074
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
+++G + Y + + + ++Q G + ++ DP++ + KG+GF P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+FV GL ++ E+DL+ F FG I+++ + K G
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCG 335
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 494
+ S + +F+ L I E+++RE FG I + +VT++
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEI 195
+R ++IG D T LKE +E++GEI
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.1 bits (62), Expect = 0.69
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Score = 29.1 bits (62), Expect = 0.69
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
L+V L E+ +R YFS FG ++ + + +++TG
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTG 143
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSL----KEFYEQWGEIVDVVVMKD 219
LF+ L+ ++ L K++++QWG ++ V V+KD
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD 117
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.7 bits (61), Expect = 0.91
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHI 261
+LF+G + + T + +F++ +G+I+D +M GFGF+ +
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEV 44
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYR--TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
P L++ LD T S L++ + +G I+ ++ P + SKG+GF+
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFV 430
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 154 DSSLKEFYEQW-GEIVDVVVMKDPKTKRSKGFGFIHILKPIWLMKLKII 297
DSS K+FY W G+I V+ G + + PIW++K +++
Sbjct: 123 DSSDKQFYRYWGGQIFSAVI---------AGAASVTLTNPIWVVKTRLV 162
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 204 SCNERPKNQEIKRIWIYTYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASA 380
S N+ PK+ + I S V + RP + D + PK A EE+K+ ++++
Sbjct: 211 SLNQPPKHLTVSPSSIQRLSPQPYVRPTSDERPIETDSSVSAPKVANHDEELKQGKSTS 269
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 607 FHIQMLIFNLVILLQAYSVNWIIIIKLYKTKAPFFPVSLSVTTLTETIFPNVL 449
F +L+F +VI LQ + V I + ++ FPV L T+ T + + L
Sbjct: 254 FFATLLVFGVVIYLQDFRVEIPIRSQKFRGYRSTFPVKLLYTSNTPIMLQSAL 306
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 644 YPRQTCQFSILLFSHPNVDL*FGDFVASILCQLDHNHQTLQNQSPFLSCFFI 489
Y R F L F+H +L FG++ +++ LD H N PF +++
Sbjct: 176 YGRSNIPFHSLNFTHYIEELSFGEYYPALVNALD-GHYGHANDHPFAFQYYL 226
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +1
Query: 109 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 210
++R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 235 SKGFGFIHILKPIWLMKLKIIGLTKLTEELS 327
+KGF F H + + + +K+ L KLTE +S
Sbjct: 434 AKGFAFSHEISTLIYLYIKLRKLDKLTEYVS 464
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 261 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLK 413
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 73 PSESGDDYEEPEHTRKLFI 129
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 713 DQNDSNLRGFPPDPRVDRDLIYHYPRQTCQFSILL 609
DQN N++ FP P +H P T Q +L+
Sbjct: 171 DQNSINIKLFPVFPSPPTVKSFHVPILTAQLDLLM 205
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 8.5
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Frame = +3
Query: 210 NERPKNQEIKRIWIYTYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI----KRPEAS 377
N+RPKN+E I Y ++ + N+ P K+ P + R EA
Sbjct: 20 NKRPKNEEYPEIPGYLGNRKPSYTQNPNSGPGKLHYASPRPNNVSSSVGVASGGDRQEAD 79
Query: 378 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGAL 518
L G++ EE +L F ++ + ++ T+ + K L
Sbjct: 80 QLQDALISCGIQLKEEELNLSTSFYDPSSLNTFALTTEDRSRKSDFL 126
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 482
++V L ++I ++LR YF FG I+ V
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = -2
Query: 560 ILCQLDHNHQTLQNQSPFLSCFFICHNTNRNNISKCTKILSQVFFFNV 417
+LC L H + + + + + H RN +S C + Q++ N+
Sbjct: 292 LLCFLTHRYPFFRCEDDIDAIVELAHIFGRNGMSNCALLHGQIWSDNI 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,591
Number of Sequences: 5004
Number of extensions: 54332
Number of successful extensions: 254
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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