Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00736
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 62 4e-10
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 62 4e-10
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 58 5e-09
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 58 5e-09
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 58 6e-09
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 58 6e-09
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 58 6e-09
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 58 6e-09
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 58 6e-09
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 58 6e-09
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 57 1e-08
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 56 2e-08
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 56 2e-08
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 56 2e-08
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 56 2e-08
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 56 3e-08
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 56 3e-08
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 56 3e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 7e-08
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 54 1e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 54 1e-07
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 54 1e-07
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 54 1e-07
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 54 1e-07
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 52 3e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 52 4e-07
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 52 4e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 51 7e-07
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 51 7e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 50 2e-06
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 50 2e-06
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 50 2e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 49 3e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 49 3e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 4e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 48 5e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 48 5e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 48 5e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 48 5e-06
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 9e-06
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 48 9e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 9e-06
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 48 9e-06
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 48 9e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 9e-06
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 47 1e-05
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 47 1e-05
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 47 1e-05
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 47 1e-05
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 47 1e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 2e-05
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 46 3e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 46 3e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 46 3e-05
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 46 3e-05
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 46 3e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 46 3e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 46 3e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 46 3e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 46 3e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 46 3e-05
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 45 6e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 44 8e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 2e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 43 2e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 42 3e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 42 3e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 42 3e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 42 3e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 42 3e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 3e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 42 3e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 42 3e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 42 4e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 42 4e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 42 6e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 42 6e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 42 6e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 41 7e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 41 7e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 41 7e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 41 0.001
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 41 0.001
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 40 0.002
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 40 0.002
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.002
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 40 0.002
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 0.002
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.002
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 40 0.002
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 40 0.002
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 0.002
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 40 0.002
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 39 0.003
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 39 0.003
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 39 0.004
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.007
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.007
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 38 0.007
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 38 0.009
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.009
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At5g51300.2 68418.m06360 splicing factor-related contains simila... 37 0.012
At5g51300.1 68418.m06359 splicing factor-related contains simila... 37 0.012
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 36 0.021
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 36 0.021
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 36 0.021
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.021
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 36 0.028
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.028
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.028
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 36 0.037
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.037
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.037
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.049
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.049
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 35 0.049
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 35 0.065
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.065
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 35 0.065
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.065
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.065
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 35 0.065
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.065
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 35 0.065
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 34 0.086
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 34 0.086
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 34 0.086
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 34 0.11
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 34 0.11
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 34 0.11
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 33 0.15
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.20
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 33 0.26
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 32 0.35
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 32 0.35
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 32 0.46
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.60
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.60
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.60
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 31 0.60
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 31 0.60
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 31 0.80
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 31 0.80
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 31 0.80
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 31 0.80
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.80
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 31 1.1
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 31 1.1
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 31 1.1
At4g38440.1 68417.m05432 expressed protein 30 1.4
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 2.4
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 2.4
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 2.4
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 2.4
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 2.4
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 29 3.2
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 3.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 4.3
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 4.3
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 4.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 4.3
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 28 5.6
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 28 5.6
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 5.6
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 28 5.6
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 7.4
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 28 7.4
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 28 7.4
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 27 9.8
At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing p... 27 9.8
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 27 9.8
At1g78810.2 68414.m09186 expressed protein 27 9.8
At1g78810.1 68414.m09185 expressed protein 27 9.8
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 27 9.8
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFI
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFI 154
Score = 58.8 bits (136), Expect = 3e-09
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ P
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP 57
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE---IKRPEASAT---------VKKLFVAGLKQDIEEEDLREY 446
H IDGR+VE K+AVPR++ + R +S+ +K+FV GL + E D + Y
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 447 FSTFGNIVSVSVVTDKET 500
F FG V V+ D T
Sbjct: 128 FEQFGTTTDVVVMYDHNT 145
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ D EE L+EYFS+FG ++ ++ D+ TG+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45
Score = 36.7 bits (81), Expect = 0.016
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ +D + V++V L+ H++ + ++VK+A+ K
Sbjct: 150 GFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEAS 377
TY V++ H+++G++VE KRAVP+E P S
Sbjct: 155 TYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTD 628
GFGFV F D V + + + H I + ++ KKA+ + D
Sbjct: 48 GFGFVVFAD-PAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFI
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFI 154
Score = 58.8 bits (136), Expect = 3e-09
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ P
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP 57
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE---IKRPEASAT---------VKKLFVAGLKQDIEEEDLREY 446
H IDGR+VE K+AVPR++ + R +S+ +K+FV GL + E D + Y
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 447 FSTFGNIVSVSVVTDKET 500
F FG V V+ D T
Sbjct: 128 FEQFGTTTDVVVMYDHNT 145
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ D EE L+EYFS+FG ++ ++ D+ TG+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45
Score = 36.7 bits (81), Expect = 0.016
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ +D + V++V L+ H++ + ++VK+A+ K
Sbjct: 150 GFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEAS 377
TY V++ H+++G++VE KRAVP+E P S
Sbjct: 155 TYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTD 628
GFGFV F D V + + + H I + ++ KKA+ + D
Sbjct: 48 GFGFVVFAD-PAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +1
Query: 61 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 240
LN S GD Y + T+K+F+GGL TD ++++E +G + DV +M D T R +
Sbjct: 95 LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 151
Query: 241 GFGFI 255
GFGF+
Sbjct: 152 GFGFV 156
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLF+GG+ + T + L+E + +GE+ +VM+D T R +GFGF+ P
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Frame = +3
Query: 258 YSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRP--------------EASATVKKL 395
+S ++D + H ID R V+ KRA+ REE + +A KK+
Sbjct: 54 FSDPSVLDRVLQEK-HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKI 112
Query: 396 FVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
FV GL + +E+ R+YF +G + V+++ D+ T +
Sbjct: 113 FVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNR 149
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLFV G+ + +E+ LRE+F+ +G + V+ DK TG+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGR 45
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTD 628
GFGFV F D +DRV LQ+ H I + +DVK+A+S+ +
Sbjct: 48 GFGFVIFSDPSVLDRV-LQEKHSIDTREVDVKRAMSREE 85
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGFV FD D VD V + H + + ++VK+A+ K
Sbjct: 152 GFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/51 (47%), Positives = 38/51 (74%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI
Sbjct: 29 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 79
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Frame = +3
Query: 321 IVEPKRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 470
+VE K+AVPR++ ++ + KK+FV GL + E + ++YF+ FG I
Sbjct: 1 MVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMIT 60
Query: 471 SVSVVTDKET 500
V V+ D T
Sbjct: 61 DVVVMYDHRT 70
Score = 34.7 bits (76), Expect = 0.065
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ +D + VD+V + H++ + ++VK A+ K
Sbjct: 75 GFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 111
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/51 (47%), Positives = 38/51 (74%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 152
Score = 58.0 bits (134), Expect = 6e-09
Identities = 21/51 (41%), Positives = 37/51 (72%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ P
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADP 57
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREYFS 452
H IDG+IVE K+AVPR++ ++ + KK+FV GL + E + ++YF+
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFA 127
Query: 453 TFGNIVSVSVVTDKET 500
FG I V V+ D T
Sbjct: 128 QFGMITDVVVMYDHRT 143
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ + E+ LR+YF +FG ++ ++ D+ TG+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
Score = 34.7 bits (76), Expect = 0.065
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ +D + VD+V + H++ + ++VK A+ K
Sbjct: 148 GFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/51 (47%), Positives = 38/51 (74%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 152
Score = 58.0 bits (134), Expect = 6e-09
Identities = 21/51 (41%), Positives = 37/51 (72%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ P
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADP 57
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREYFS 452
H IDG+IVE K+AVPR++ ++ + KK+FV GL + E + ++YF+
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFA 127
Query: 453 TFGNIVSVSVVTDKET 500
FG I V V+ D T
Sbjct: 128 QFGMITDVVVMYDHRT 143
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ + E+ LR+YF +FG ++ ++ D+ TG+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
Score = 34.7 bits (76), Expect = 0.065
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ +D + VD+V + H++ + ++VK A+ K
Sbjct: 148 GFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T+K+F+GGL T++ K +++Q+G I DVVVM D T+R +GFGFI
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 168
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = +1
Query: 67 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
M P E E KLFIGG+ + T + L+E++ ++G++V+ V+M+D T R++GF
Sbjct: 1 MNPEEQ--KMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGF 58
Query: 247 GFIHILKP 270
GFI P
Sbjct: 59 GFIVFADP 66
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 17/83 (20%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE---IKRPEA--------------SATVKKLFVAGLKQDIEEE 431
H IDGR VE K+AVPR++ +KR + A KK+FV GL I E
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 136
Query: 432 DLREYFSTFGNIVSVSVVTDKET 500
+ + YF FG I V V+ D T
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNT 159
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/51 (35%), Positives = 35/51 (68%)
Frame = +3
Query: 354 EIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
E ++ E+++ + KLF+ G+ D +EE L+EYF +G++V ++ D+ TG+
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGR 54
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ FD + VD V + H++ + ++VK+A+ K
Sbjct: 164 GFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 353
T+ VD + H+++G++VE KRAVP+E
Sbjct: 169 TFDSEESVDMVLHKTFHELNGKMVEVKRAVPKE 201
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +1
Query: 79 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
E G++ K+F+GGL + T +++ ++EQ+GEIV+ VV+ D T RSKG+GF+
Sbjct: 10 EGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFV 68
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
K+FV GL + + + +R YF FG IV V+TDK TG+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGR 61
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFI
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/51 (41%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI P
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEEDLR 440
H IDGR VE K+AVPR++ +KR + KK+FV GL I EE+ +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 441 EYFSTFGNIVSVSVVTDKET 500
YF FG I V V+ D T
Sbjct: 128 NYFDQFGTIADVVVMYDHNT 147
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ D +EE LR+YFS +G++V ++ D+ TG+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ FD D VDRV + H++ + ++VK+A+ K
Sbjct: 152 GFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 353
T+ VD + H+++G++VE KRAVP+E
Sbjct: 157 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFI
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/51 (41%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI P
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEEDLR 440
H IDGR VE K+AVPR++ +KR + KK+FV GL I EE+ +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 441 EYFSTFGNIVSVSVVTDKET 500
YF FG I V V+ D T
Sbjct: 128 NYFDQFGTIADVVVMYDHNT 147
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ D +EE LR+YFS +G++V ++ D+ TG+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ FD D VDRV + H++ + ++VK+A+ K
Sbjct: 152 GFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 353
T+ VD + H+++G++VE KRAVP+E
Sbjct: 157 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFI
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/51 (41%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI P
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEEDLR 440
H IDGR VE K+AVPR++ +KR + KK+FV GL I EE+ +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 441 EYFSTFGNIVSVSVVTDKET 500
YF FG I V V+ D T
Sbjct: 128 NYFDQFGTIADVVVMYDHNT 147
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ D +EE LR+YFS +G++V ++ D+ TG+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ FD D VDRV + H++ + ++VK+A+ K
Sbjct: 152 GFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 353
T+ VD + H+++G++VE KRAVP+E
Sbjct: 157 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/84 (30%), Positives = 48/84 (57%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEED 434
T++ +VD+ + H I+G+ VE KR +P+ KK+FV G+ + E++
Sbjct: 66 TFADPSVVDKVIEDT-HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124
Query: 435 LREYFSTFGNIVSVSVVTDKETGK 506
L+++F+ +GN+V V+ D ET +
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNR 148
Score = 58.0 bits (134), Expect = 6e-09
Identities = 22/61 (36%), Positives = 41/61 (67%)
Frame = +1
Query: 73 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 253 I 255
+
Sbjct: 155 V 155
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFI P
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ F D VD+V ++ H I + +++K+ I K
Sbjct: 61 GFGFITFADPSVVDKV-IEDTHVINGKQVEIKRTIPK 96
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 378 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
A+ K+F+ GL +D ++F +G I ++ D+ TG+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQ 58
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNH-QIKDQHLDVKKAISKTDM 631
GFGFV FD + VD + + N + D +++KKA K +
Sbjct: 151 GFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSL 191
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/84 (30%), Positives = 48/84 (57%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEED 434
T++ +VD+ + H I+G+ VE KR +P+ KK+FV G+ + E++
Sbjct: 66 TFADPSVVDKVIEDT-HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124
Query: 435 LREYFSTFGNIVSVSVVTDKETGK 506
L+++F+ +GN+V V+ D ET +
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNR 148
Score = 58.0 bits (134), Expect = 6e-09
Identities = 22/61 (36%), Positives = 41/61 (67%)
Frame = +1
Query: 73 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 253 I 255
+
Sbjct: 155 V 155
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFI P
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGF+ F D VD+V ++ H I + +++K+ I K
Sbjct: 61 GFGFITFADPSVVDKV-IEDTHVINGKQVEIKRTIPK 96
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 378 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
A+ K+F+ GL +D ++F +G I ++ D+ TG+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQ 58
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T+K+F+GGL TT+ K ++E++G DVVVM D T R +GFGF+
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFV 166
Score = 49.2 bits (112), Expect = 3e-06
Identities = 17/46 (36%), Positives = 34/46 (73%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+GG+ T++ +LK+++ ++G +++ VV K+ T + +GFGF+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFV 52
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLFV G+ ++ EE L++YFS +G ++ V +K TGK
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGK 45
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGFV +D D V+ V H++ D+ ++VK+AI K
Sbjct: 162 GFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 354 EIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
E+ ++ KK+FV GL + EE+ + YF FG V V+ D T +
Sbjct: 109 EMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNR 159
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 512 GFGFVEF-DDYDPVDRVCLQQNHQIKDQHLDVKKAISKTDM 631
GFGFV F +D D V L+ H I + +DV+KAI K ++
Sbjct: 48 GFGFVRFANDCDVVK--ALRDTHFILGKPVDVRKAIRKHEL 86
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 255 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASA 380
TY V+ + H++ + VE KRA+P+E I+ +A
Sbjct: 167 TYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNA 208
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
K+F+GGL + T +L++ +EQ+GEI++ VV+ D T RSKG+GF+ P
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 75
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 357 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ P T K+FV GL + + E LR++F +G I+ V+ DK TG+
Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGR 63
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLFV GL ++ L++ F++FG + +V+ D+ETG+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGR 74
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLFV GL ++ L++ F++FG + +V+ D+ETG+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGR 74
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+ P
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDP 58
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T K+FV GL + + LR YF FG+IV V+TDK +G+
Sbjct: 5 TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGR 46
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+ P
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDP 58
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T K+FV GL + + LR YF FG+IV V+TDK +G+
Sbjct: 5 TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGR 46
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIH 258
KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ GL ++ LR+ F+ FG++V V+ D+ETG+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR 74
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIH 258
KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ GL ++ LR+ F+ FG++V V+ D+ETG+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR 74
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
S DD E P T+KLFI GL + T++ +L+ +E +GE+V+V ++ D +KRSKG+ F
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 327
Query: 253 I 255
+
Sbjct: 328 L 328
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 494
KKLF+ GL E+ LR F FG +V V ++ DK
Sbjct: 282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 317
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLFIGG+ Y + SL+E + ++GE+VD V+ D +T RS+GFGF+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFV 86
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ ++E+ LRE F+ +G +V V+ D+ETG+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGR 79
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T+K+F+GG+ D KEF+ Q+GE+ + +M+D T RS+GFGF+
Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFV 176
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 TYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 431
TY+ + +VD+ Q+N H I G+ VE KR +PR + + KK+FV G+ ++++
Sbjct: 89 TYADSSVVDKVIQDN--HIIIGKQVEIKRTIPRGSMSSNDFKT--KKIFVGGIPSSVDDD 144
Query: 432 DLREYFSTFGNIVSVSVVTDKETGK 506
+ +E+F FG + ++ D TG+
Sbjct: 145 EFKEFFMQFGELKEHQIMRDHSTGR 169
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = +1
Query: 70 KPSES---GDDYEEP------EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDP 222
KPSE DD +P + K+F+GGL TT + + + ++GEI D V+MKD
Sbjct: 18 KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDR 77
Query: 223 KTKRSKGFGFI 255
KT + +GFGF+
Sbjct: 78 KTGQPRGFGFV 88
Score = 34.3 bits (75), Expect = 0.086
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTDM 631
GFGFV + D VD+V +Q NH I + +++K+ I + M
Sbjct: 84 GFGFVTYADSSVVDKV-IQDNHIIIGKQVEIKRTIPRGSM 122
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
K+FV GL ++ + ++F +G I ++ D++TG+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQ 81
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
KLFIGG+ + T ++ L+E++ +GE++ V VM++ T R +GFGF+ P
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T+K+F+GGL T + ++E +G + D V+M D T+R +GFGF+
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFV 156
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ G+ D +E LREYFS FG ++ V+V+ +K TG+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGR 45
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Frame = +3
Query: 258 YSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASAT--------------VKKL 395
+S ++D ++ H ID R V+ KRA+ REE S T KK+
Sbjct: 54 FSDPAVIDRVLQDK-HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKI 112
Query: 396 FVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
FV GL + ++ R YF T+G + ++ D+ T
Sbjct: 113 FVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTT 147
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTD 628
GFGFV F D +DRV LQ H I ++ +DVK+A+S+ +
Sbjct: 48 GFGFVAFSDPAVIDRV-LQDKHHIDNRDVDVKRAMSREE 85
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISK 622
GFGFV FD D VD V + H + + ++VK+A+ K
Sbjct: 152 GFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK 188
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
K+F+GGL + T +L+ ++Q+G+I++ VV+ D T RSKG+GF+ P
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDP 75
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 357 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ P T K+FV GL + + E LR +F +G+I+ V+TDK TG+
Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGR 63
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 53.6 bits (123), Expect = 1e-07
Identities = 19/46 (41%), Positives = 34/46 (73%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 360 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ P T K+FV GL + +++R YF FG I+ ++TDK TGK
Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 53.6 bits (123), Expect = 1e-07
Identities = 19/46 (41%), Positives = 34/46 (73%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 360 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ P T K+FV GL + +++R YF FG I+ ++TDK TGK
Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T K+FV GL + +E ++++F FG I+ V+TDK +G+
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGR 52
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T K+FV GL + +E ++++F FG I+ V+TDK +G+
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGR 52
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T K+FV GL + +E ++++F FG I+ V+TDK +G+
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGR 52
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 53.2 bits (122), Expect = 2e-07
Identities = 20/54 (37%), Positives = 38/54 (70%)
Frame = +1
Query: 94 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ + HT K+F+GGL + T ++ +++Q+GEI++ V++ D T +SKG+GF+
Sbjct: 11 FGDTTHT-KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFV 63
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 360 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ P T K+FV GL + +++R YF FG I+ ++TDK TGK
Sbjct: 8 RSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+G L +RTT L+ ++EQ+G++VD V+ + RSKG+GFI
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFI 58
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 384 VKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
V K+FV L +DLR YF FG +V +VV++ G+
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGR 51
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 HKIDGRIVEPKRAVPREEIKRP-EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVS 479
H ID R V+ KR +PR + +A + +K+FV GL +EE++L+ YF +G+I+
Sbjct: 128 HVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQ 187
Query: 480 VVTDKETGK 506
++ D TG+
Sbjct: 188 IMYDHHTGR 196
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+GG+ + TT + ++ ++GE+VD V+M D T +GFGF+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 91 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
D + TRK+F+GGL + LK ++ +G+I++ +M D T RS+GFGF+
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFV 203
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
KLFV G+ + E YF FG +V ++TD+ TG
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITG 104
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQ-QNHQIKDQHLDVKKAISK 622
GFGFV F D VDR+ + H++ D+ +++K+A K
Sbjct: 199 GFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 52.0 bits (119), Expect = 4e-07
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++++G L TTD L+E + +G +VD +VM+D T RS+GFGF+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFV 49
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+++V L ++ LRE FS +GN+V V+ D+ T +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDR 42
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GG+ Y T + L+E + ++GE+VD ++ D +T RS+GF F+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFV 80
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
K+FV G+ +E LRE FS +G +V ++ D+ETG+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGR 73
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/46 (45%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLFIGGL + TT+ L E + + G++V+ ++ D + RSKGFGF+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFV 80
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/53 (43%), Positives = 38/53 (71%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
E+PE+ + FIGGL + T+D L++ +E++G +V+ V+ D + RS+GFGFI
Sbjct: 3 EDPEY--RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFI 53
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
T L++G LD TDS L E + Q G++V V V +D T+RS G+G+++ P
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATP 96
Score = 34.7 bits (76), Expect = 0.065
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 351 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGA 515
+ +K + L+V L + + ++ LRE+F+ FG I S V+ D +G+
Sbjct: 315 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGS 369
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+FI LD +L E + +G I+ V DP + +SKG+GF+
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFV 178
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 61 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 237
L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S
Sbjct: 28 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 85
Query: 238 KGFGFI 255
+GFGFI
Sbjct: 86 RGFGFI 91
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 61 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 237
L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S
Sbjct: 58 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 115
Query: 238 KGFGFI 255
+GFGFI
Sbjct: 116 RGFGFI 121
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFV 54
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 ASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
AS V+ + FV GL ++ L F+ +G+++ ++ D+ETG+
Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGR 47
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFV 54
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 ASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
AS V+ + FV GL ++ L F+ +G+++ ++ D+ETG+
Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGR 47
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLFIGGL + + SLK+ + +GE+ +V + D + RS+GFGF+
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLF+ GL ++E+ L++ FS+FG + V + DK +G+
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGR 80
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 48.4 bits (110), Expect = 5e-06
Identities = 17/46 (36%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ FV GL +EDL+ FS FG+++ ++ D+E+G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 48.4 bits (110), Expect = 5e-06
Identities = 17/46 (36%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ FV GL +EDL+ FS FG+++ ++ D+E+G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 48.4 bits (110), Expect = 5e-06
Identities = 17/46 (36%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ FV GL +EDL+ FS FG+++ ++ D+E+G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 48.4 bits (110), Expect = 5e-06
Identities = 17/46 (36%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ FV GL +EDL+ FS FG+++ ++ D+E+G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
R +F+ GL + TT +LK +E +GEI + V+ D T R+KGFGF+
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFV 209
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ ++ + +FV GL D E+L+ F +G I SVV DK+TG+
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGR 202
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 100 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ E + LF+ GL RTT L+ + Q+GE+ D V+ D + SKGFGF+
Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 363 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
RP+A + LFV+GL + E LR F+ FG + VVTD+ +G
Sbjct: 49 RPQAEPSTN-LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+++GGL + T L F++++GEI+ V V+ D +T RS+G+GF+
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFV 59
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T K++V GL +E L +F FG I+ V+VV D+ET +
Sbjct: 11 TFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDR 52
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+L++G L Y T S L + + + G +VDV ++ D T RS+GFGF+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 58 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 237
++ K ++ Y + H K++ G L + T LK+ + ++ V+ + T RS
Sbjct: 202 VMRTKIRDNNRSYVDSPH--KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRS 259
Query: 238 KGFGFI 255
+GFGFI
Sbjct: 260 RGFGFI 265
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 47.6 bits (108), Expect = 9e-06
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---HILKPIWLMK 285
RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+ H+ + +K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 286 ---LKIIGLTKLTEELSSQNEQFQGKRLKD 366
KI G +T +L++ Q G ++ D
Sbjct: 135 EPSKKIDGRVTVT-QLAASGNQGTGSQIAD 163
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++ + +KLF+ GL D E LR FS++G++ V+ DK TGK
Sbjct: 69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGK 114
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 47.6 bits (108), Expect = 9e-06
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---HILKPIWLMK 285
RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+ H+ + +K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 286 ---LKIIGLTKLTEELSSQNEQFQGKRLKD 366
KI G +T +L++ Q G ++ D
Sbjct: 135 EPSKKIDGRVTVT-QLAASGNQGTGSQIAD 163
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++ + +KLF+ GL D E LR FS++G++ V+ DK TGK
Sbjct: 69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGK 114
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI------HILKPIWL 279
KL++ GL +RTT+ +L++ +EQ+G ++ + ++ D R KGF F+ +K I
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 280 MKLKII-GLTKLTEELSSQNEQFQGKRLKD 366
M K + G EE ++++ + K +D
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 366 PEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 494
P +S+ K KL+V+GL E+ LR+ F FGN++ +++V DK
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDK 112
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++F+GGL TD L+ + ++G+I+D +M + T RS+GFGFI
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFI 53
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++FV GL ++ + DL FS FG+I+ ++ +++TG+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGR 46
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+K+FV GL D + E L E F +G I V DK +GK
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGK 179
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T KK++V+ + +++ + L +FS FG I + DK TG+
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGR 284
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 94 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
+ EHT +K+++ + L F+ ++GEI + + D T R KGF
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+K+FV GL D + E L E F +G I V DK +GK
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGK 179
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T KK++V+ + +++ + L +FS FG I + DK TG+
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGR 284
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 94 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
+ EHT +K+++ + L F+ ++GEI + + D T R KGF
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+K+FV GL D + E L E F +G I V DK +GK
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGK 179
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
T KK++V+ + +++ + L +FS FG I + DK TG+
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGR 284
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 94 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
+ EHT +K+++ + L F+ ++GEI + + D T R KGF
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/46 (36%), Positives = 34/46 (73%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GGL + T ++ + + ++G+I++ V++ D T+RSKG+GF+
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
K+FV GL D +E + ++F +G+I+ +++DK T
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLT 54
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +3
Query: 396 FVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
FV GL QD +E+DL + FS FGN++ ++ D++TGK
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGK 46
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 124 FIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
F+ GLD T + L + + ++G ++D ++ D T +S+ FGF+
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFV 53
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/60 (31%), Positives = 38/60 (63%)
Frame = +1
Query: 76 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
S+ + + +++ +++GG+ + T+ L + Q+GEIVDV +++D T +SKGF F+
Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+LF+ L TTD SL++ + +G+I + +++D +T+R KGFGFI
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFI 53
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
+LFV+ L ++ LR+ FS FG I ++ D ET
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSET 44
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+++ GL + T L ++E++GEIV V+ D T+RSKGFGF+
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFV 55
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
K++VAGL E L YF FG IV VV D T
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGAT 46
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKA 613
GFGFV F + + R C NH I + ++ K A
Sbjct: 51 GFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 76 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFG 249
SE G + EP KLF+G L Y +L +EQ G EI +V+ +D T +S+GFG
Sbjct: 100 SEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD--TDQSRGFG 157
Query: 250 FI 255
F+
Sbjct: 158 FV 159
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 306 KIDGRIVEPKRAVPR--EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVS 479
+++GR + RA PR ++P +++V L D++ L FS G +V
Sbjct: 178 EVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDAR 237
Query: 480 VVTDKETGK 506
VV+D+ETG+
Sbjct: 238 VVSDRETGR 246
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHI 261
++++G L + L+ + + G++VD V+ D +T RS+GFGF+ +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQM 255
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
RKL + G+ + LK++ ++G++ D +VMKD T RS+GFG++
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYV 49
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+G L + L++++ ++G I D + KDPK +GFGF+
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFV 286
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 58 ILNMKPSESGDDYEEP-EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKR 234
IL +K + ++ +P + ++F+ + ++S + +E++GEI D+ + KD +K+
Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130
Query: 235 SKGFGFI 255
+G GFI
Sbjct: 131 HRGIGFI 137
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+KL V G+ DI+ + L++Y S FG++ V+ D+ TG+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGR 42
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 366 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTD-KETGKKG 512
P K+FV L Q+ +DLR+YF FG+I + D K +G +G
Sbjct: 233 PTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRG 282
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+LF+ GL TT+ L++ + +G++VD V+ D + RSKGFGF+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFV 80
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/45 (35%), Positives = 31/45 (68%)
Frame = +3
Query: 372 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++ T +LFV+GL + E L++ F++FG +V V+TD+++G+
Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGR 73
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 94 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
Y E EH KLF+G L + T SL + + G++V V+ D T RS+G+GF+
Sbjct: 172 YPETEH--KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 34.3 bits (75), Expect = 0.086
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +3
Query: 315 GRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 494
GR ++ A + K P T KLFV L + E L F G++V VV D
Sbjct: 153 GRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDG 212
Query: 495 ETGK 506
+TG+
Sbjct: 213 DTGR 216
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFI 255
KL+ G L Y ++L + + + E+V+V+ +D T +S+GF F+
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD--TGQSRGFAFV 131
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+F+GGL T LKE + +G+IVD VV+ D ++ S+GFGF+
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFV 82
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 327 EPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+P+ + + S T K+FV GL + E L+E F +FG IV VV D+E+G
Sbjct: 16 QPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESG 74
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +1
Query: 76 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 509
+ S+TVK LFV + + EE++R YF GN++ V+++ DK TG++
Sbjct: 115 DRSSTVK-LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQ 160
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/46 (36%), Positives = 33/46 (71%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFV 256
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
KLFV L + E+++ E F FG++ V ++ D+ +G
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRG 252
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +1
Query: 76 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 509
+ S+TVK LFV + + EE++R YF GN++ V+++ DK TG++
Sbjct: 115 DRSSTVK-LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQ 160
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/46 (36%), Positives = 33/46 (71%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFV 256
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
KLFV L + E+++ E F FG++ V ++ D+ +G
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRG 252
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/87 (34%), Positives = 47/87 (54%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKPIWLM 282
P H ++FIGGL + L++ E+ GEI +V +MKD + SKG+ F+
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFV-------AF 164
Query: 283 KLKIIGLTKLTEELSSQNEQFQGKRLK 363
K K + K EEL S ++F+GK ++
Sbjct: 165 KTKDVA-QKAIEELHS--KEFKGKTIR 188
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 73 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
P S + + L++ + T+ LKE +++ GE+ +V KR FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGF 335
Query: 253 IH 258
+H
Sbjct: 336 VH 337
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/46 (36%), Positives = 32/46 (69%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++F+G LD ++ LK+ + GE+ +V ++K+P+TK+SKG F+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFL 260
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK-KGALVL 524
++FV L + EEDL++ F G + V ++ + +T K KG+ L
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFL 260
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFV 150
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 357 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++ + T +K+FV GL + E L F +G I +VV DK TGK
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGK 143
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFV 150
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 357 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++ + T +K+FV GL + E L F +G I +VV DK TGK
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGK 143
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
R +F+ G + TT +LK +E +GEI + V+ D T R KG+GF+
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFV 454
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ +FV G D +E+L+ F ++G I SVV DK+TG+
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGR 447
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/51 (35%), Positives = 33/51 (64%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
RKL++G L + ++ L++ +E +G + V + DP+T + KGFGFI ++
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQ 315
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 100 EPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+PE R +F + + T+ + EF+ + G++ DV ++ D ++RSKG G+I
Sbjct: 162 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYI 214
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+KL+V L ++ E LR+ F FG + V + D ETG+
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQ 304
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +1
Query: 91 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
D ++ + F+GGL + T + S++ + ++GE+ D ++ D +T RSKGF F+
Sbjct: 36 DVAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFV 90
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+ FV GL +E+ + F+ FG + ++ D+ETG+
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGR 83
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 91 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++ EP KLF+G L Y +L +EQ G + V+ + +T +S+GFGF+
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV 196
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Frame = +3
Query: 276 VDEAQN-----NRPHKIDGRIVEPKRAVPREEIKRPEASATVK----KLFVAGLKQDIEE 428
VDEA+ NR + ++GR++ +A PR RPE + V +++V L D++
Sbjct: 201 VDEAETAVEKFNR-YDLNGRLLTVNKAAPRGS--RPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 429 EDLREYFSTFGNIVSVSVVTDKETGK 506
L + FS G +V VV D+ETG+
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGR 283
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/46 (30%), Positives = 31/46 (67%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++++G L + + L++ + + G++V+ V+ D +T RS+GFGF+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/81 (25%), Positives = 32/81 (39%)
Frame = +3
Query: 351 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALVL*S 530
E + PE S K LFV L D+ + L F G + V+ ++ET +
Sbjct: 139 ERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGF-V 196
Query: 531 LMIMIQLTEYACNKITKLKIN 593
M + E A K + +N
Sbjct: 197 TMSSVDEAETAVEKFNRYDLN 217
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 342 VPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+P + RPE +FV GL + +EDL++ F+ FG IVSV + K G
Sbjct: 289 MPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG 342
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHIL 264
+F+GGLD TD LK+ + ++GEIV V K KG GF+ +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSV------KIPVGKGCGFVQFV 347
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQN 574
G+GFVEF+ +D D+V + N
Sbjct: 145 GYGFVEFESHDVADKVLREFN 165
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
T +LF+ L Y T+ L E + +G+I +V ++ D +TKRS+G +I L P
Sbjct: 260 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIP 312
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +3
Query: 312 DGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTD 491
DG++ + +AV + + +LFV L EE+L E+FSTFG I V +V D
Sbjct: 243 DGKVAQESKAVSDDVLD-------TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLD 295
Query: 492 KET 500
KET
Sbjct: 296 KET 298
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
RK+F+ GL + T SL + ++Q+GEI D + D + +SKG+GFI
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFI 174
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALVL 524
+K++V+ + DI+ + L E+FS FG I + DK TG+ L
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFAL 272
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 103 PEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
PE+ RK+++ + L EF+ ++GEI + + D T R KGF
Sbjct: 222 PENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGF 270
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHIL 264
KL+IGGL T + SLK+ + + + + VM + T RS+G+GF++ +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFI 80
Score = 36.7 bits (81), Expect = 0.016
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KL++ GL +E L++ FS+F + V+T+K TG+
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGR 70
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Frame = +3
Query: 252 YTYSQAHMVDEAQNNRPHKID----GRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQD 419
Y+ Q +M+ + NN P G KR R + A ++ KL+VA + +
Sbjct: 64 YSGQQQNMIVDQSNNAPPPFPPSPCGGSSLRKR---RSQSATDNADGSIAKLYVAPISKT 120
Query: 420 IEEEDLREYFSTFGNIVSVSVVTDKETGKKGA 515
E D+R+ F +GN+ + + DK TG++ A
Sbjct: 121 ATEYDIRQVFEKYGNVTEIILPKDKMTGERAA 152
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +1
Query: 61 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 240
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 241 GFGF 252
G+ F
Sbjct: 401 GYAF 404
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALVL*SLMIMIQLTEYACN 569
++FV GL E +RE +FG + +V D+ETG + + +T+ AC
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF-CVYQDLSVTDIACA 418
Query: 570 KITKLKI 590
+ +K+
Sbjct: 419 ALNGIKM 425
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +1
Query: 61 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 240
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 241 GFGF 252
G+ F
Sbjct: 401 GYAF 404
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALVL*SLMIMIQLTEYACN 569
++FV GL E +RE +FG + +V D+ETG + + +T+ AC
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF-CVYQDLSVTDIACA 418
Query: 570 KITKLKI 590
+ +K+
Sbjct: 419 ALNGIKM 425
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +1
Query: 61 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 240
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 241 GFGF 252
G+ F
Sbjct: 401 GYAF 404
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALVL*SLMIMIQLTEYACN 569
++FV GL E +RE +FG + +V D+ETG + + +T+ AC
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF-CVYQDLSVTDIACA 418
Query: 570 KITKLKI 590
+ +K+
Sbjct: 419 ALNGIKM 425
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIH 258
+++ L TTD LK + ++G+I VVMKD + K SKGFGF++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVN 75
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
L++ LD +D LKE + +G + VM+DP SKG GF+ P
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATP 182
Score = 34.3 bits (75), Expect = 0.086
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGA 515
L+V L I +E L+E FS FG + S V+ D KG+
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 174
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+ + L + T++ LK + +GEI +V ++KD KRSKG+ FI
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFI 86
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +1
Query: 64 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
N P+ +GD Y + LF+ L+Y +++S +K +E +G I V ++ D T + KG
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180
Query: 244 FGFIHIL 264
+ FI +
Sbjct: 181 YAFIEYM 187
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
K LFV+ L + E ++ F ++G I V +VTD+ T K
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNK 177
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIH 258
L++G LD+ TDS L +++ + ++V V V +D T S G+G+++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVN 93
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
+++ L TTD LK + Q+G I VVM+D K S+ FGF++ P
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENP 275
Score = 34.3 bits (75), Expect = 0.086
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGA 515
L+V L + +E LRE F+ FG I S V+ D KG+
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS 370
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 384 VKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
V LFV L + ++ + L E FS G IVS V TD +G
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++F+GGL + T+ L+ ++++G+I + +M T R +GFGFI
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFI 58
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++FV GL D+ E L F +G I ++ ++TG+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGR 51
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++F+GGL + T+ L+ ++++G+I + +M T R +GFGFI
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFI 58
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
++FV GL D+ E L F +G I ++ ++TG+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGR 51
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+G L + + L + +E G + V V+ D T RS+GFGF+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 295
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLFV L +++ L + F + GN+ V V+ DK TG+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGR 138
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+G L + + L + +E G + V V+ D T RS+GFGF+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 303
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLFV L +++ L + F + GN+ V V+ DK TG+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGR 138
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI------HILKPIWLM 282
L++ LD+ T+S + + +G++ V V+KD T++S+G F+ K M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 283 KLKIIGLTKLTEELSSQN---EQFQGKRLKDQK 372
KI+ KLT +++ N +F KR+ K
Sbjct: 119 DAKILNGRKLTVSIAADNGRASEFIKKRVYKDK 151
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
L+V+ L + D+ FSTFG + V+V+ D+ T
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHT 94
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 73 PSESGDDYEEP---EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
P Y P E R L+IG L Y ++ L + Q GE+V V V+++ T + +G
Sbjct: 7 PQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG 66
Query: 244 FGFIHIL 264
+GFI +
Sbjct: 67 YGFIEFI 73
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 234
LN SG + P+H+ +F+G L TD L+E F + + V+ DP T R
Sbjct: 99 LNWASFGSGQKVDAGPDHS--IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156
Query: 235 SKGFGFI 255
SKG+GF+
Sbjct: 157 SKGYGFV 163
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 366 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
PE+ T + VA L Q++ EE+L++ FS G ++ V + K G
Sbjct: 230 PESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYG 275
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 345 PREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
P+ P+ V+ L++ L+ ++E L FS G +VSV V+ +K TG+
Sbjct: 10 PQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQ 63
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 85 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
G + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+
Sbjct: 63 GSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 117
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 321 IVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
++E +P E+K P+ LFV L E+EDL FS FG +VS V+ D +T
Sbjct: 226 VLESIGDIPEAEVKPPD-----NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKT 280
Query: 501 G 503
G
Sbjct: 281 G 281
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+ +T +FV G+ D+ +EDLR+ FS FG +VSV + K G
Sbjct: 315 DGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 106 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHIL 264
+ + L++G L + ++ L + GE+ V V+++ T +S+G+GF+ L
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFL 157
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L TD L E F +++ + V+ D T RSKG+GF+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFV 249
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+GG+D D L++ + Q+GE+V V K KG GF+
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSV------KIPVGKGCGFV 361
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KLF+G L + + L + +E G + V V+ D T RS+GFGF+
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++++G L + D +L+ + + G++V+ V+ D + RSKGFGF+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFV 250
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
KLFV L +++ L + F + GN+ V V+ DK TG+
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGR 130
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 342 VPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+P R E +FV GL + +EDL++ FS FG IVSV + K G
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG 344
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHIL 264
+F+GGLD TD LK+ + ++GEIV V K KG GF+ +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSV------KIPVGKGCGFVQFV 349
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 246
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQN 574
G+GFVEF+ +D D+V + N
Sbjct: 147 GYGFVEFESHDVADKVLQEFN 167
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L TD++L + + + D VM D KT RS+GFGF+
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFV 190
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L TD++L + + + D VM D KT RS+GFGF+
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFV 194
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+FV GL D+ EEDL + FS FG +VSV + K G
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCG 365
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+GGLD T+ L + + +GE+V V K KG GF+
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSV------KIPVGKGCGFV 367
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L +D+ L E F ++ + V+ D T RSKG+GF+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFV 260
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T L + + +RTT L + ++G++VDV + +D +T S+GF F+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
T L + + +RTT L + ++G++VDV + +D +T S+GF F+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 76 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
S + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+
Sbjct: 61 SRGRSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 118
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +1
Query: 85 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHIL 264
G E +++GGLD + ++ L E + Q G +V+V V KD T + +GFI
Sbjct: 15 GQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYR 74
Query: 265 KPIWL-MKLKIIGLTKLTEELSSQNEQFQGKRLKD 366
+K++ + KL + N+ Q K+ D
Sbjct: 75 SEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLD 109
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV-DVVVMKDPKTKRSKG 243
++ +++ D + + LFIG LD + L + + +G I + +M+DP T S+G
Sbjct: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRG 155
Query: 244 FGFI 255
FGFI
Sbjct: 156 FGFI 159
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVS-VSVVTDKETG 503
LF+ L D++E+ L + FS FG I S ++ D +TG
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTG 151
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +1
Query: 61 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 240
+++ P S +++ +++ L TD+ LK + ++GEI VVMKD + K S+
Sbjct: 101 IHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SR 159
Query: 241 GFGFIHILK 267
FGF++ K
Sbjct: 160 RFGFVNFEK 168
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKE 497
+ S ++V L + + DL+ F FG I S V+ D E
Sbjct: 113 DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE 155
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
E PE+ +LF G L D L + + ++ V++D +T ++KG+GF+ L P
Sbjct: 131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNP 188
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +3
Query: 333 KRAVPREEIKRPEASATVK-------KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTD 491
KRA+PR+ + T+ +LF L ++ ++ L + F+ F V+ D
Sbjct: 112 KRAIPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRD 171
Query: 492 KETGK 506
K TGK
Sbjct: 172 KRTGK 176
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +1
Query: 82 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
SGD + LF+G L + TT+ +L+E ++G I ++ +++ T S+G+GF+
Sbjct: 53 SGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFV 110
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +1
Query: 76 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
SESG P T +++ L TD LK+ + ++G+I VVMKD ++ S+ FGF+
Sbjct: 216 SESG---AVPSFTN-VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFV 270
Query: 256 HILKP 270
+ + P
Sbjct: 271 NFVSP 275
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
++F+GGL Y T+ ++E E +G + ++KD +T SKG+ F
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALVL*SLMIMIQLTEYACN 569
++FV GL E +RE +FG + ++V D+ETG + +T+ AC
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF-CVYQDPSVTDIACA 434
Query: 570 KITKLKI 590
+ +K+
Sbjct: 435 ALNGIKM 441
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEED----LREYFSTFGNIVSVSVVTDKETG-KKGALVL 524
KK+FV G + E+D LRE+FS+ G I +VSV D++TG KG L
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYL 451
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKPIWLMK-L 288
++ LF L + + ++ F+++ GE+VDV + +GFG + K L
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
Query: 289 KIIGLTKLTEELSSQNEQFQGKR 357
+ G L E+ Q +G+R
Sbjct: 356 EFHGRPLLGREIRLDIAQERGER 378
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 115 RKLFIGGLDYRTTD----SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+K+F+ G D ++ ++L+E + GEI +V V D T SKG ++
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYL 451
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
P H ++++GG+ T+ LK F GE+ +V +M++ + KG+ F+
Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFV 138
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 372 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
+S+ + +FV + D EE LRE G +VS +VTD+ETGK
Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGK 48
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
R +F+G + Y T+ L+E + G +V ++ D +T + KG+GF
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGF 54
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 106 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
+ + +++ L TD L + Q+G + VVVM+D RS+GFGF++ P
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNP 252
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
L++ L ++ L+E + +G+IV VM + RSKGFGF+
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFV 349
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
L+V L + + E LRE F +G IVS V+ + KG
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKG 345
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 375 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
S+ L+V L D+ E+DL + FS +VSV + + TGK
Sbjct: 17 SSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGK 60
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFI 255
E P+HT +F+G L TD L + ++ +G + V+ D T RSKG+GF+
Sbjct: 150 EGPDHT--IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFV 201
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +1
Query: 64 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 210
N + + +GD+ +P +T +F+GGLD TD LK + Q+GE++ V +
Sbjct: 246 NTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKSIFGQFGELLHVKI 291
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
+FV GL ++ +++L+ F FG ++ V + K G
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG 298
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
L+IG + + ++ ++ F+ Q+G + V V ++ KT +SK FGFI P
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDP 111
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 330 PKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
P R P + P L++ + E ++ +FS FG + V V +K+TGK
Sbjct: 44 PARKAP---VTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGK 99
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
LF+ G+ + +T+ +L + + Q+G+++ V V+ D R KGF ++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYV 67
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +1
Query: 82 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
SG + H +F+G L TD+ L + + D VM D KT RS+GFGF+
Sbjct: 129 SGQREDTSSHFN-IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFV 185
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFI 255
E PEHT +F+G L TD L E ++ + + V+ D T RSKG+GF+
Sbjct: 169 EGPEHT--VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 369 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
E+ T +FV + Q + E+DL+ F FG +V V + K G
Sbjct: 272 ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 61 LNMKPSE----SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 210
L M+P+ G+ E +F+G +D T+ LK + Q+GE+V V +
Sbjct: 256 LTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI 309
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
++IG +D R +D L + Q G ++D+ + +D +T + KGF F
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAF 52
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
K+++G L T L+ + + G++V V + P T +S GFGF+
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFV 223
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 100 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 210
+P +T +F+GGLD TD LK + Q+GEIV V +
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 106 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFI 108
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 234
LN SGD ++ P++T +F+G L TD L E F + + V+ D T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 235 SKGFGFI 255
+KG+GF+
Sbjct: 196 TKGYGFV 202
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 100 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 210
+P +T +F+GGLD TD LK + Q+GEIV V +
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 106 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFI 108
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 234
LN SGD ++ P++T +F+G L TD L E F + + V+ D T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 235 SKGFGFI 255
+KG+GF+
Sbjct: 196 TKGYGFV 202
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
L+IG L D L + +GEIV V+KD T SKG+GF+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
L+IG L D L + +GEIV V+KD T SKG+GF+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 79 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMK-DPKTKRSKGFGFI 255
E+ + +E K+F+G L +EF+ Q+G I +V+++K + +++ GFGFI
Sbjct: 153 ETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFI 212
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 345 PREEIKRPEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGA 515
P EE + P+ + K+FV L I++ + E+F FG I +V ++ +K A
Sbjct: 150 PEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/79 (26%), Positives = 41/79 (51%)
Frame = +3
Query: 282 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 461
+A+N + D E + + + ++ R E +A F++ L +EED+R++F G
Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675
Query: 462 NIVSVSVVTDKETGKKGAL 518
+ S+ ++ K+TGK L
Sbjct: 676 GVDSIRILHHKDTGKPRGL 694
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/79 (26%), Positives = 41/79 (51%)
Frame = +3
Query: 282 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 461
+A+N + D E + + + ++ R E +A F++ L +EED+R++F G
Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675
Query: 462 NIVSVSVVTDKETGKKGAL 518
+ S+ ++ K+TGK L
Sbjct: 676 GVDSIRILHHKDTGKPRGL 694
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 390 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
K++V L + + LR +FS FG IVS V+ D++TG+
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGR 251
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = +3
Query: 261 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 440
S+ ++DE + K + + E +K+P +L+V + + + L
Sbjct: 70 SELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPC----ELYVCNIPRSYDIAQLL 125
Query: 441 EYFSTFGNIVSVSVVTDKETGK 506
+ F FG ++SV V + +TG+
Sbjct: 126 DMFQPFGTVISVEVSRNPQTGE 147
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +1
Query: 157 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ L + ++ +G ++ V V ++P+T S+G G++
Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 79 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
LF+ + ++ +++L F +FG ++S V DK TG
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATG 386
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 339 AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
A +EE + KLFV + + + E L F F + V+++ DK T
Sbjct: 2 AEAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKIT 55
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 79 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
LF+ + ++ +++L F +FG ++S V DK TG
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATG 387
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 339 AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
A +EE + KLFV + + + E L F F + V+++ DK T
Sbjct: 2 AEAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKIT 55
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 70 KPSESGDDYEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 246
K + + +PE R +F + R T+ + EF+ + G++ DV ++ D ++RS+G
Sbjct: 166 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGI 225
Query: 247 GFI 255
G++
Sbjct: 226 GYV 228
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 375 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
S ++L+V L ++ E+DLR+ F +FG++ V V D ETG
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETG 322
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
++IG + + TT+ L E + + GEI +++ D TK GF F+
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 363 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 506
RP A+ + +FVA + ++ L +F+ FG ++ +VTD TG+
Sbjct: 508 RPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQ 555
Score = 35.5 bits (78), Expect = 0.037
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +1
Query: 100 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
E +R +F+ + + T SL + ++GE++ ++ DP T + G +I +
Sbjct: 511 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTR 566
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 35.5 bits (78), Expect = 0.037
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 348 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
+E+ + + A V ++V + + EE+LR++FS G I S ++ D++ KG
Sbjct: 291 KEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG 345
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 363 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 494
+PE T L++ L D+ E+ LRE F+ FG IVS+++ D+
Sbjct: 195 KPEEKYT--NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE 236
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 357 IKRPEASAT-VKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
++ P+A V +FV L + + L++ F FGNIVS V T ++ +G
Sbjct: 101 VRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRG 153
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.049
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 291 NNRPHKIDGRIVEPKRAVPREEIK---RPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 461
N P K + VE K V E+ + E KL+V G+ E+++R YF + G
Sbjct: 126 NKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCG 185
Query: 462 NIVSVSVVTDKETG 503
I+ V E G
Sbjct: 186 VIIKVDCKMRPEDG 199
Score = 34.7 bits (76), Expect = 0.065
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
KL++GG+ Y++T+ ++ ++ G I+ V P+ G FI
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFI 207
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 76 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
S G D + + L T + L E + +G + V V D KT S+GFGF+
Sbjct: 200 SAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFV 259
Query: 256 HIL 264
+ +
Sbjct: 260 NFV 262
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
L + L + L++ +EQ+G + D+ + +D T +GFGF+ + P
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDP 87
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 34.7 bits (76), Expect = 0.065
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
+E R +F+G +DY T +++ ++ G + V ++ D K + KGF ++ ++
Sbjct: 86 KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVE 141
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 133 GLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
GL TTD SL++ + + ++ KD +T+R KGFGFI
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFI 112
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.7 bits (76), Expect = 0.065
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
+E +R +++G +DY T +++ ++ G + V ++ D K + KGF ++ ++
Sbjct: 97 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVE 152
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.7 bits (76), Expect = 0.065
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 378 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
+++ LFV G + E L++ FS FG + +V ++ ++ T
Sbjct: 55 SSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERT 95
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 34.7 bits (76), Expect = 0.065
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 378 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
+++ LFV G + E L++ FS FG + +V ++ ++ T
Sbjct: 74 SSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERT 114
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 103 PEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRSKGFGFI 255
P T LF+ L + LKEF++ G +V V+ +RS G+GF+
Sbjct: 185 PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFV 236
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 61 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 240
+ + S +G E T L + GLD + L+ + + I D+ +++D T S+
Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499
Query: 241 GFGFIH 258
GF F+H
Sbjct: 500 GFAFVH 505
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 127 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ GL ++T+ L + +WG + V V+++ + S+GF FI
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFI 344
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 112 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
++ LF G L Y+ S ++ F+++ GE+VD V + KG+G I P
Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKEAGEVVD-VRLSSFDDGSFKGYGHIEFASP 434
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 330 PKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
P+ + P + + ++ + F + L +D +++LR +FS G + V V TD+ETG
Sbjct: 464 PRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETG 521
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +1
Query: 64 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
N P G+ + + F L L+ + + GE+ V V D +T S+G
Sbjct: 466 NSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRG 525
Query: 244 FGFIHI 261
F +I +
Sbjct: 526 FAYIDL 531
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKP 270
L + L + L+ +EQ+G + D+ + +D T +GFGFI + P
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDP 88
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.3 bits (75), Expect = 0.086
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
LF+ + ++ E+++L F FG ++S V DK TG
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATG 377
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.3 bits (75), Expect = 0.086
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
LF+ + ++ E+++L F FG ++S V DK TG
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATG 368
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIV----DVVVMKDPKTKRSKGFGFI 255
+F+G L TD++L + + + D VM D KT RS+GFGF+
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFV 198
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 512 GFGFVEFDDYDPVDRVCLQQN 574
G+GFVEF+ +D D+V + N
Sbjct: 145 GYGFVEFESHDVADKVLREFN 165
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +1
Query: 58 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 237
IL MK ES EE T+ LF+ L S + F++ GE+V V ++ + + K +
Sbjct: 228 ILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHA 287
Query: 238 KGFGFI 255
G+GF+
Sbjct: 288 -GWGFV 292
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 372 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALVL*SLMIMIQL 551
A A LFV+ L + + D+ ++FS G +V+V + TG L L S +++++
Sbjct: 59 AKAVSVTLFVSELSRQTKISDIIDFFSDVGEVVNVRICL-SHTGSCCVLALLSFLLLVRQ 117
Query: 552 TEY 560
T +
Sbjct: 118 TRH 120
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 70 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 249
K ++ DD+E R LFI L + T +K+ + +GE+ + ++ TKR +G
Sbjct: 551 KETQDNDDFE-----RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTA 605
Query: 250 FI 255
F+
Sbjct: 606 FV 607
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
+ LF+ L D+ +E++++ F+ FG + S+S+V K T
Sbjct: 561 RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVT 598
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +1
Query: 61 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 240
L+MKP + D + + L++G L TT+S L E + ++G+I + V S+
Sbjct: 3 LSMKPFRADDSGFQ---SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYS------SR 53
Query: 241 GFGFIH 258
GF FI+
Sbjct: 54 GFAFIY 59
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 500
K L+V G+ ++ ++DL E FS FG I + +++T
Sbjct: 250 KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT 287
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
L++GGL +S L + +G+I DV D ++ + FGF+ L+
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLE 63
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
+FI LD + +L E + +G I+ V D T RSKG+GF+ K
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK 185
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +1
Query: 58 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 237
++N P++S + LF+G L + TTD+ ++ Q+G + ++ + + +S
Sbjct: 186 MMNKSPTQS---FVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKS 242
Query: 238 KGF 246
KG+
Sbjct: 243 KGY 245
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 366 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 503
P+ S + V+G+ ++ +EED+ F FG I ++++ D+ +G
Sbjct: 88 PQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILKPI 273
LF+G L + TTD+ L+ ++G + +V + + +SKG+ + P+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPV 286
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
+E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ ++
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVE 138
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIHILK 267
+E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ ++
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVE 138
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 85 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
G D + + L T L E + +G + V D KT S+GFGF+
Sbjct: 164 GSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFV 220
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 342 VPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKE 497
+PR+E + P A + LFVA L + D+ + G +VSV ++ + E
Sbjct: 112 LPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHE 163
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
KL+I LDY + +KE + + GE+ V D ++ RSKG
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKG 127
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
T KL+++ L + ED++E F+ G + +V D+ KG
Sbjct: 84 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKG 127
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
KL+I LDY + +KE + + GE+ V D ++ RSKG
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKG 63
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
T KL+++ L + ED++E F+ G + +V D+ KG
Sbjct: 20 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKG 63
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
KL+I LDY + +KE + + GE+ V D ++ RSKG
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKG 129
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
T KL+++ L + ED++E F+ G + +V D+ KG
Sbjct: 86 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKG 129
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 181 AHRILLMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 68
A ++L+ + F+ R HR ++ Q LH + R PK S
Sbjct: 43 AENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 396 FVAGLKQDIEEEDLREYFSTFGNIVSVSV 482
+V L+ D EE DL+ FS FG+++ +V
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNV 39
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 333 KRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 482
KR P EI+ P+ + + V L +D E++RE F G+I SVS+
Sbjct: 179 KRLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSI 224
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 333 KRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 482
KR P EI+ P+ + + V L +D E++RE F G+I SVS+
Sbjct: 179 KRLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSI 224
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 381 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKG 512
T KL+++ L + ED++E FS G++ + D+ KG
Sbjct: 106 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKG 149
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 118 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 243
KL+I LDY ++ +KE + + G++ + D ++ RSKG
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKG 149
>At4g38440.1 68417.m05432 expressed protein
Length = 1465
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 273 MVDEAQNNRPHKIDGRIVEPK-RAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF 449
+ DE N + +G V PK A+P+E+ + ++ A ++ DLR F
Sbjct: 266 ITDETAKNS--RTEGHFVTPKVMAIPKEKSVVQKPGIAQGFVWDAWTERVEAARDLR--F 321
Query: 450 STFGNIVSVSVVTDKETGKK 509
S GN+V VV+ ETG K
Sbjct: 322 SFDGNVVEEDVVSPAETGGK 341
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 291 NNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 431
+ +P +DGR+V K+A P +K P + + +GL ++I E+
Sbjct: 409 DTKPPFLDGRVVYTKQAEPVMPVKDPTSDMAIISRKGSGLVKEIREK 455
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMK 216
R +F+G +Y T S L+ ++++G VD V MK
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGR-VDRVDMK 34
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 64 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI 195
N P+ +GD Y + LF+ L+Y +++S +K +E +G I
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPI 164
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
L + L ++ LKE + +GE++ V + D +G G++
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYV 144
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 121 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
L + L ++ LKE + +GE++ V + D +G G++
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYV 144
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+ LF+ L Y T ++ +F+++ GE+V V ++ + K K G GF+
Sbjct: 127 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGK-LVGCGFV 172
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 DDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
+D P + LF+ L +T S + +F+ GE+V + +M + + K G+GF+
Sbjct: 234 EDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKH-VGYGFV 289
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 136 LDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 255
LD R D L++ +E++G + D+ + ++ T +GFGF+
Sbjct: 56 LDARPND--LRDSFERFGPLKDIYLPRNYYTGEPRGFGFV 93
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 100 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKD 219
E E + L++GGL+ R + + + + +GE+ + VM +
Sbjct: 220 EDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 348 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 476
R ++ P + LFV + +E+ +L F FG I S+
Sbjct: 172 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 214
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 348 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 476
R ++ P + LFV + +E+ +L F FG I S+
Sbjct: 185 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 227
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 97 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 252
E+P+ T ++IG + D + E G + + +DP TK+ KGFGF
Sbjct: 200 EKPQTT--IYIGKIATVENDFMMS-ILEFCGHVKSCLRAEDPTTKKPKGFGF 248
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 378 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 509
+++ LFV G + E L++ FS FG + + + + +K
Sbjct: 55 SSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNEHYFSGSKNHRK 98
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 70 KPSESGD-DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKD 219
K E G + E + R L++GGL+ R + +++ + GEI + ++ +
Sbjct: 212 KAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE 262
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/52 (21%), Positives = 22/52 (42%)
Frame = +1
Query: 73 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKT 228
P + E R +++ +D T+ L + G++VD + DP +
Sbjct: 114 PGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNS 165
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 79 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKD 219
ES DD E + L++GGL+ R + +++ + GEI + ++ D
Sbjct: 220 ESPDD----ESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD 262
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDL---REYFSTFGNIVSVSV 482
+++ GL ++ +EDL +EYF +G ++ VS+
Sbjct: 70 VYIVGLPLNLADEDLLQHKEYFGQYGKVLKVSM 102
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 393 LFVAGLKQDIEEEDL---REYFSTFGNIVSVSV 482
+++ GL ++ +EDL +EYF +G ++ VS+
Sbjct: 111 VYIVGLPLNLADEDLLQRKEYFGQYGKVLKVSM 143
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 387 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKGALV 521
K + ++ L QD+ EE++ + G +V+ V + GKK ALV
Sbjct: 355 KMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVF--EMNGKKQALV 397
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 262 LKPIWLMKLKIIGLTKLTEELSSQNEQFQGKRLKDQ 369
LKPI L + I G + E+ +EQF+GKRL ++
Sbjct: 15 LKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50
>At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 144
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 213 ERPKNQEIKRIWIYTYSQAHMVDEAQNNRPHKIDGRI 323
E P+ Q +KRIW Y + H + + QN R D ++
Sbjct: 86 EIPRTQALKRIW--AYIKEHDLQDPQNKRDILCDEKL 120
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKE----FYEQWGEIVDVVVMKDPKTK 231
+ ++I L+ R LK + Q+G I+DVV +K PK +
Sbjct: 10 QSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLR 52
>At1g78810.2 68414.m09186 expressed protein
Length = 480
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = -2
Query: 467 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 378
N+S+ +++S+VF NV L+S Y++ + GG
Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372
>At1g78810.1 68414.m09185 expressed protein
Length = 481
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = -2
Query: 467 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 378
N+S+ +++S+VF NV L+S Y++ + GG
Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 115 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKT 228
R +++ LD + T+ L + G++VD + DP +
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNS 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,044
Number of Sequences: 28952
Number of extensions: 270974
Number of successful extensions: 1333
Number of sequences better than 10.0: 200
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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