Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00735
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    41   2e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    37   0.003
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.032
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    28   1.2  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    28   1.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.8  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    27   2.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   6.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.4  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   8.5  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 508  EISFTCPALSLPKLSSADSPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPDSCPKLP 329
            ++S   P + LP   SAD+P +P P +  P      P P S  P P+S    P + P +P
Sbjct: 1016 KLSSKAPPVPLP---SADAPPIPVPSTAPP-----VPIPTSTPPVPKSSSGAPSAPPPVP 1067

Query: 328  NPESWCPN---PESCPKLPNPESRPKPPTQS 245
             P S  P+   P   P +P P   P  P  S
Sbjct: 1068 APSSEIPSIPAPSGAPPVPAPSGIPPVPKPS 1098


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 448 KLPNPESWCPNPESWCPNPESWCPNPESWCPNPDSCPKLPNPESWCPNPESCPKLPN--P 275
           +L  P S  P P    P+P S  P P    P P S P    P +   +P S P LP+  P
Sbjct: 136 ELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP 195

Query: 274 ESRPKPP 254
              PK P
Sbjct: 196 PMPPKVP 202



 Score = 34.3 bits (75), Expect = 0.018
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -3

Query: 466 SSADSPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPDSCPKLPNPESWCPNPESCPK 287
           +SA  P  P P    P P+S    P S  P P    P+P S P +P+     P P S P 
Sbjct: 120 ASAAPPSAPAP----PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP--PIPSSLPP 173

Query: 286 LPNPESRPKPP 254
              P +  K P
Sbjct: 174 PAQPAAPVKSP 184



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 304 PESCPKLPNPESRPKPPTQSHDR 236
           P S P  P P+S  +PPT +  R
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPR 146


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 397  NPESWCP-NPESWCPNPDSCPKLPNPESWCPNPESCPKLP-NPESRPKPP 254
            +P S  P  P+S  P   S P  P P    P P S P +P  P S P PP
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 603  PQMAVPIPPNEVAMPSRPFSILSSSIPWSAKLKYP 499
            P M+VP PP+   MP+ P S     +P S+    P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = -3

Query: 439  NPESWCP-NPESWCPNPESWCPNPESWCPNPDSCPKLPNPESWCPNPESCPKLPNPESRP 263
            +P S  P  P+S  P P+   P P    P P S P  P+       P S P  P P S  
Sbjct: 1685 HPVSTPPVRPQSAAP-PQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740

Query: 262  KPPTQSHDRN 233
                   DR+
Sbjct: 1741 PSVPNPGDRS 1750


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 499 FTCP--ALSLPKLSSA--DSPKLPNPESWCPNPESWCPNPESWCPNPESW 362
           +T P  A+ +P L  A  DS   P PE++  NP+ W PN  +   +P++W
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPNGLAE-QSPKNW 449


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = -3

Query: 463 SADSPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPDSCPKLPNPESWCP-NPESCPK 287
           S+ S  LPN  +   N     P   S   N  S  P P + P    P SW P N  +   
Sbjct: 39  SSSSSTLPNYAASSLNSR---PVSSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYA 95

Query: 286 LPNPESR---PKPPTQS 245
            P P S     KPP Q+
Sbjct: 96  SPPPSSNYNTAKPPYQT 112


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 358 PNPDSCPKLPNPESWCPNPESCPKLPNPESRPKPPT 251
           PNP S  +L   ES  PN E      NP S   PPT
Sbjct: 260 PNPQSGTRLGTKESVAPNNEGS---SNPPSLVNPPT 292


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 280 NPESRPKPPTQSHDRNYRIKGCDFQS 203
           +P + P PPT+ HDR+++    +++S
Sbjct: 44  HPSNPPPPPTRLHDRSFKPVSKNYES 69


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -2

Query: 338 EATESRVVVSKSRIVPEASESGVTSKATNPESRPKLSN 225
           +ATE+    SK+++    +ES V SKA + +SR KLS+
Sbjct: 461 QATENNNTPSKAKV---KAESKVRSKAKSDKSRAKLSS 495


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = -3

Query: 472 KLSSADSPK-LPNPESWCPNPESWCPNPESWCPNPESWCPNPDSCPKLPNPESWCPNPES 296
           K + AD+ K L  P+     P    P P+      ES   +    P    PE   P P+ 
Sbjct: 136 KTADADAAKDLSTPQD-SSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKP 194

Query: 295 CPKLPNPESRPK 260
               P  +S+PK
Sbjct: 195 AKSEPVKQSKPK 206


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = -3

Query: 460 ADSPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPDSCPKLPNPESWCPNPESCPKLP 281
           A SP++P   ++ P      P P    P P +  P   +  +LP P     N  S   +P
Sbjct: 218 AVSPEIP--PTYTPKQADPLPAPPP--PPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIP 273

Query: 280 NPESR----PKPPTQSHDRN 233
            P +     P+PPT +  R+
Sbjct: 274 PPPATPSQPPRPPTNASTRS 293


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 358 PNPDSCPKLPNPESWCPNPESCPKLPNPESRPKPP 254
           P P   P  P   S  P P   P +P   S P+PP
Sbjct: 575 PQPPVAPVAPEVPS-VPQPPVAPVVPEAPSVPQPP 608



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 358 PNPDSCPKLPNPESWCPNPESCPKLPNPESRPKPP 254
           P   + P +P   S  P P + P +P   S P+PP
Sbjct: 650 PQRPAVPVVPEAPS-VPQPPAAPVVPEVPSVPQPP 683


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 102 YSFDFTASINIATAMREGLCYCKY 31
           Y+F+ TA       M+E LCY  Y
Sbjct: 198 YAFNRTADFETVREMKEKLCYVSY 221


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 325 PESWCPNPESCPKLPNPESRPKPPTQ 248
           P +  PNP S   L  P  + KPP+Q
Sbjct: 353 PNATLPNPPSSELLTTPFQQIKPPSQ 378


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 451 PKLPNPESWCPNPESWCPNPESWCPNPESWCPNPD 347
           P    PE W  +   + P+PE+    PE W    D
Sbjct: 281 PDAVKPEDWLEDEPLYIPDPEA--QKPEDWDDEED 313


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 609 RAPQMAVPIPPNEVAMPSRPFS 544
           R P M +P PP++  +PS P S
Sbjct: 24  RQPSMNLPTPPHDDGLPSIPRS 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,691
Number of Sequences: 5004
Number of extensions: 57092
Number of successful extensions: 232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)