Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00735
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   0.99 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.0  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect(2) = 0.99
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 292  PKLPNPESRPKPPTQSHDRN 233
            P   +PE  P PP ++HD+N
Sbjct: 1852 PVSGSPEP-PPPPPRNHDQN 1870



 Score = 20.6 bits (41), Expect(2) = 0.99
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 193  RNHDQNCRSRYDQNQNCRI 137
            RNHDQN  S  D  ++  I
Sbjct: 1865 RNHDQNNSSFNDSKESNEI 1883


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 339 RSYRIQSRGVQIQNRARSFRIRSHVQSHQPRVTTETIESR 220
           R Y +    + +    R+FR+RS V+  + R+  + I  R
Sbjct: 491 RKYAMLKLKIVLSTILRNFRVRSDVKESEFRLQADIILKR 530


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 405 GVQIRNHGVQIRSHGVQIRIHARSYRIQSR 316
           G++IRN      +  VQ  IH  S +IQSR
Sbjct: 236 GLKIRNSTKDTLNSVVQGAIHGDSRQIQSR 265


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 591 VPIPPNEVAMPSR-PFSILSSSIPWSAKLKYP 499
           VP+P   V  P R PF       P++ K+K+P
Sbjct: 21  VPLP--NVPQPGRRPFPTFPGQGPFNPKIKWP 50


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = -3

Query: 379 PNPESWCPNPDSCPKLPNPESWCPNPESCPKLPNPESRPKPPT 251
           P P        S P LP P S    P+S  + PN      P T
Sbjct: 639 PLPPKRIRKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPST 681


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 313 CPNPESCPKLPNPE 272
           CP   +CP  PNP+
Sbjct: 213 CPPTLACPLNPNPQ 226



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 361 CPNPDSCPKLPNPE 320
           CP   +CP  PNP+
Sbjct: 213 CPPTLACPLNPNPQ 226


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 277 PESRPKPPTQSHDRNYRIKGCDFQSRQIRNHDQNCRSRYDQNQNCRI 137
           PE R  P  QSH   +  +    QS  +   + +   RY ++ N +I
Sbjct: 62  PEHRDLPIYQSHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKI 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,365
Number of Sequences: 438
Number of extensions: 4618
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)