Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00734
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 31 0.13
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.2
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 2.8
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 26 4.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 4.9
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 6.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.6
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -1
Query: 644 QNTPTHFNIELQYNTFCYSYITKKNNLNIVIYAKNLSKNDPHYLLK 507
+N PT I+L+ ++ +T+ NN++I +K + KN HY+L+
Sbjct: 245 KNPPTILQIQLERTSYTCQGLTR-NNVSISFPSKLILKNKHHYILR 289
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -1
Query: 644 QNTPTHFNIELQYNTF----CYSYITKKN-NLNIV-IYAKNLSKNDPHYLLKLPN*FKRN 483
Q+ P F E Y F ++I N +NI +KN N+ + LK+ ++ +
Sbjct: 2105 QDIPLFFKAEESYFNFPAVKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMS 2164
Query: 482 EIHQGIILLG 453
E + GIILLG
Sbjct: 2165 EAYNGIILLG 2174
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 686 KWYKSYTKNLWSSAQNTPTHFNIELQYNTFCYSYITKKN 570
KW ++ KN +S NTPT NI+ ++ T+KN
Sbjct: 421 KWPQNLAKNNINSEPNTPTKSNIDTGKAHSARAHKTRKN 459
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 5 YNSPQPRVNVSEHILFITTSYCDVTSNLVRPYLIYNINYNEFQFRIPHIWRIYKFSVL-C 181
+ +P P++++ HI+ TS D+ V P + + + ++ + + +IY+ S L C
Sbjct: 358 WRNPLPQLSIISHIILSPTSMFDIREFNVNPVVSVD-SLKDYSEELVNYAKIYEKSNLNC 416
Query: 182 FCKIKIIL 205
++I+L
Sbjct: 417 IELVQILL 424
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = -1
Query: 671 YTKNLWSSAQNTPTHFNIELQYNTFCYSY--ITKKNNLNIVIYAKN-LSKNDPHYL-LKL 504
Y + S N P ++I Y+ CY Y I K L I+ Y L PH+ +K
Sbjct: 27 YMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHFFPIKR 86
Query: 503 PN*FKRNEIHQGI--ILLGTE 447
F N +H + I++ +E
Sbjct: 87 IRPFHENPLHSFVYRIMISSE 107
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 2 KYNSPQPRVNVSEHILFITTSYCDVTSNLVRPYLIYNINYNEFQFRIPHIW 154
KY P N++ +L + ++ C +++ + INY +F FR W
Sbjct: 32 KYVLSSPGYNMNFLLLTVQSTVCVAAIGILKRLKV--INYRDFDFREAKFW 80
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 47 LFITTSYCDVTSNLVRPYLIYNINYNEFQFRI 142
L Y ++T+N+V Y +Y ++ ++ FR+
Sbjct: 198 LIFEDQYIELTTNMVEDYNVYGLSGSQQSFRL 229
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 630 PFQYRITVQHFLLFIHYQE-EQFKYS 556
PF YR+ ++ F+ F +++E E+ YS
Sbjct: 258 PFTYRVLIESFMKFGNFEEAEKLAYS 283
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 8.6
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -1
Query: 620 IELQYNTFCYSYITKKNNLNIVIYA-KNLSKNDPHYLLKLPN*FKRNEIHQGIILLGTEY 444
IEL YS+ +++ NI IYA SK D PN ++E Q I +
Sbjct: 108 IELAIRRMFYSFCAIQDDSNISIYAIGTSSKTDSSIQAASPNEDLKSEGAQEI-----DS 162
Query: 443 QFLTYSVNIHHTFSESIEKPQKTKL*SIY 357
Q T S++ + E + +K K+ S Y
Sbjct: 163 QSETVSISSDVDYDEDRKDLKKAKICSAY 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,641
Number of Sequences: 5004
Number of extensions: 68999
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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