Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00734
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336...    29   2.9  
02_03_0394 + 18546089-18546323,18546784-18546986,18547598-185477...    29   3.9  
10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335     28   9.0  
10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317     28   9.0  
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201...    28   9.0  
01_01_0740 - 5756491-5757054,5757247-5757407,5757580-5757607           28   9.0  

>08_01_0378 +
           3360215-3360253,3360326-3360437,3362176-3362213,
           3363949-3363966,3364629-3364847,3364937-3366727,
           3367764-3367827,3367915-3367975,3368685-3368694
          Length = 783

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 467 IILLGTEYQFLTYSVNIHHTFSES 396
           ++   + Y  L+YS+NIHH FS S
Sbjct: 610 VVYQHSAYSHLSYSLNIHHCFSNS 633


>02_03_0394 +
           18546089-18546323,18546784-18546986,18547598-18547787,
           18548624-18549015,18549495-18550055
          Length = 526

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 574 FLVMYE*QKVLYCNSILKWVGVFCAD-DQRFLVYDLYHF 687
           FLV      +L+  +++  +G +CAD DQR LVY+  HF
Sbjct: 164 FLVEVLMLSLLHHQNLVNLIG-YCADGDQRLLVYEYMHF 201


>10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335
          Length = 227

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 178 KHTKLINTPYMWYSKLKFIVID 113
           K  K IN P  WY +++FI  D
Sbjct: 98  KRAKFINVPIRWYDEMEFIFQD 119


>10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317
          Length = 250

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 178 KHTKLINTPYMWYSKLKFIVID 113
           K  K IN P  WY +++FI  D
Sbjct: 67  KRAKFINVPIRWYDEMEFIFQD 88


>08_02_1130 +
           24517319-24518149,24519374-24519868,24519954-24520179,
           24520267-24520291,24520925-24521234,24521328-24521888
          Length = 815

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 178 KHTKLINTPYMWYSKLKFIVID 113
           K  K IN P  WY +++FI  D
Sbjct: 633 KRAKFINVPIRWYDEMEFIFQD 654


>01_01_0740 - 5756491-5757054,5757247-5757407,5757580-5757607
          Length = 250

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 178 KHTKLINTPYMWYSKLKFIVID 113
           K  K IN P  WY +++FI  D
Sbjct: 67  KRAKFINVPIRWYDEMEFIFQD 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,117,444
Number of Sequences: 37544
Number of extensions: 347935
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)