Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00734
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_50622| Best HMM Match : Omega-toxin (HMM E-Value=3.1)               29   5.2  
SB_29591| Best HMM Match : ARD (HMM E-Value=0.91)                      28   6.9  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_22129| Best HMM Match : Homeobox (HMM E-Value=4.6e-26)              28   9.1  

>SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -1

Query: 605 NTFCYSYITKKNNLNIVIYAKNLSKNDPHYLLKLPN*FKRNEI---HQGIILLGTEYQFL 435
           NTF  +YIT+ +NL  +    N        L+K  N  KR ++    +G  + GT+Y   
Sbjct: 82  NTFDDNYITRNDNLQHLYVLCNFFLKINKLLIKCENKVKRQQLIVEVRGKRVFGTKYTIA 141

Query: 434 TYSVNIHHTFSESIEKPQKT 375
            Y + ++    E  +K   T
Sbjct: 142 KYKLFLNALGLEKKKKVDTT 161


>SB_50622| Best HMM Match : Omega-toxin (HMM E-Value=3.1)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 78  HRT*FDHTLYTISITMNFNL 137
           HR+  DHT++T+++ +NFN+
Sbjct: 117 HRSRRDHTVFTLNVKINFNI 136


>SB_29591| Best HMM Match : ARD (HMM E-Value=0.91)
          Length = 360

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 629 HFNIELQYNTFCYSYITKKNNLNIVIYAKNLSKNDPHYLLKLPN*FKRNEIHQGIILL 456
           +  +E       Y+ I K+N +NI +++ +  +  P Y+ K     KR E+H  ++L+
Sbjct: 189 YLGVEFPVTVKHYNIIEKQNRININVFSYDSEQPYPIYVSK-----KRFEVHMELLLI 241


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 9   IVHNRGSTCLNIFYLLQ--LRTAM*HRT*FDHTLYTI 113
           I H RG  C N FY  Q  L+  M  R  FDH  Y++
Sbjct: 143 ISHERGYFCPNDFYCAQINLKPFMADRRYFDHFFYSL 179


>SB_22129| Best HMM Match : Homeobox (HMM E-Value=4.6e-26)
          Length = 366

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 95  PYLIYNINYNEFQFRIPHIWRIYKFSVLCFCKIKI 199
           PYLI    Y    +R  H WR + ++ L F   +I
Sbjct: 34  PYLIIRYRYRGNVYRYRHTWRYWPYTSLPFAHHRI 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,454,738
Number of Sequences: 59808
Number of extensions: 463816
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)