Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00734
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO2...    29   4.3  
At2g04910.1 68415.m00511 glycosyl hydrolase family protein 17 si...    28   7.5  

>At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO242
           5' end, gb|Z30466 and OAO242 3' end, gb|Z30467
          Length = 197

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 92  RPYLIYNINYNEFQFRIPH-IWRIYKFSVLCFCKIKIILYSLGSSFIL 232
           RP +IYNI   E    IPH  W +    VLC   + +IL     S++L
Sbjct: 143 RPSIIYNIVCEEQLLGIPHSSWSVVVLVVLCLV-VALILPRFLPSYLL 189


>At2g04910.1 68415.m00511 glycosyl hydrolase family protein 17
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 124

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 662 NLWSSAQNTPTHFNIELQYNTFCYSYITKKNNLNI 558
           N  S+A  T T  + +L  N FCYSY++   N N+
Sbjct: 80  NFNSTAFITQTDPSKQLYLNPFCYSYLSSLINQNL 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,600,733
Number of Sequences: 28952
Number of extensions: 319924
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)