Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00733
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 139 4e-34
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 80 3e-16
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 72 9e-14
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 71 2e-13
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 58 9e-10
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 54 2e-08
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 43 4e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 36 0.004
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.004
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 33 0.029
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 33 0.050
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 32 0.087
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 1.1
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.5
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 3.3
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.3
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 3.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 3.3
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 26 4.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 5.7
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.7
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.7
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 7.6
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 10.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 10.0
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 25 10.0
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 139 bits (336), Expect = 4e-34
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +2
Query: 257 NGTIDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 436
NGTIDF EFLTMMARKMKDTD+EEE+RE F+VFDKDGNG+I+ EL HV+T+LGE+L+ E
Sbjct: 62 NGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQE 121
Query: 437 EVDEMIREADIDGDGQVNYEEF 502
EV +MIREAD DGDG +NYEEF
Sbjct: 122 EVADMIREADTDGDGVINYEEF 143
Score = 96.3 bits (229), Expect = 4e-21
Identities = 45/55 (81%), Positives = 50/55 (90%)
Frame = +3
Query: 90 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD 254
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDAD
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDAD 60
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/73 (41%), Positives = 46/73 (63%)
Frame = +2
Query: 290 MMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 469
M R + D + E RE F +FD+D +G I++ EL VM +LG+ T E+ +MI E D
Sbjct: 1 MTTRNLTD-EQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDA 59
Query: 470 DGDGQVNYEEFVT 508
DG+G +++ EF+T
Sbjct: 60 DGNGTIDFTEFLT 72
Score = 56.0 bits (129), Expect = 5e-09
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +3
Query: 78 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD 254
M D EE++ +EAF +FDKDG+G IT +EL V+ SLG+ ++ E+ DMI E D D
Sbjct: 78 MKDTDNEEEV---REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTD 133
Score = 29.1 bits (62), Expect = 0.61
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 AEFKEAFSLFDKDGDGTITTKELGTVM-RSLGQNPTEAELQDMINEVDAD 254
AE ++ + D DG+GTI E T+M R + E E+++ D D
Sbjct: 48 AELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKD 97
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 257 NGTIDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTN 412
NG I E LT + + + S+EE+ + R D DG+G I+ E V+++
Sbjct: 99 NGYITVEE-LTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISS 149
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 79.8 bits (188), Expect = 3e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 266 IDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 445
ID +F++ ++ K+++T+SEEE + FRVFDKD +G+I A+ M LGEKL+D EV
Sbjct: 58 IDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQ 117
Query: 446 EMIREADIDGDGQVNYEEFV 505
M++EAD G +Y +FV
Sbjct: 118 LMVQEADPTNSGSFDYYDFV 137
Score = 56.0 bits (129), Expect = 5e-09
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +3
Query: 93 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 245
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL 54
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +3
Query: 72 STMADQLTE-EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 248
S ++++L E E E+ +AF +FDKD G I T + M++LG+ ++ E+Q M+ E D
Sbjct: 65 SFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEAD 124
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 71.7 bits (168), Expect = 9e-14
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +2
Query: 260 GTIDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 439
G + +F+ +M K+ + D EEI+ F +FD D G IS LR V L E + D+E
Sbjct: 88 GYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQE 147
Query: 440 VDEMIREADIDGDGQVNYEEFV 505
++ MI E D+D DG++N +EF+
Sbjct: 148 LEAMIEEFDLDQDGEINEQEFI 169
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 87 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 248
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + D
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFD 83
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 317 DSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 496
+ ++I E F++FD D + I ELR M LG EV +++R+ D G G + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 497 EFV 505
+FV
Sbjct: 94 DFV 96
Score = 31.9 bits (69), Expect = 0.087
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 254 RNGTIDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMT-NLGEKLT 430
++ ID+ E M R + + E+ + R FDK G G++ + VMT + E+
Sbjct: 50 KDNAIDYHELRAAM-RALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDP 108
Query: 431 DEEVDEMIREADIDGDGQVN 490
EE+ D D G+++
Sbjct: 109 LEEIKRAFELFDDDETGKIS 128
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Frame = +2
Query: 266 IDFPEFLTMMARKMK-DTDSE-EEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 439
+D +FL ++ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE
Sbjct: 55 VDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEE 114
Query: 440 VDEMIREADIDGDGQVNYEEFV 505
+DE+++ + DG VNY +FV
Sbjct: 115 MDELLKGVPVK-DGMVNYHDFV 135
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3
Query: 114 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD 254
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + A+
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE 54
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 111 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 245
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV 122
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 58.4 bits (135), Expect = 9e-10
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Frame = +2
Query: 260 GTIDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVM-----TNLGEK 424
G +DF EF+ ++ + EE+++ F+++D D +G+IS EL V+ TNL E
Sbjct: 71 GDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLRED 130
Query: 425 LTDEEVDEMIREADIDGDGQVNYEEF 502
+ VD+ I E D D DG++++EEF
Sbjct: 131 QLQQIVDKTIMEVDKDRDGKISFEEF 156
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/54 (44%), Positives = 35/54 (64%)
Frame = +3
Query: 87 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 248
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E + M ++
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESIN 94
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +2
Query: 257 NGTIDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 436
N I+ FLT M + ++ E F FD +G I + +R ++++G+++ +
Sbjct: 94 NPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQ 153
Query: 437 EVDEMIREADIDGDGQVNYEEFV 505
EV+ ++R G YE+FV
Sbjct: 154 EVESILR--SYTSHGVFYYEKFV 174
Score = 35.9 bits (79), Expect = 0.005
Identities = 12/42 (28%), Positives = 29/42 (69%)
Frame = +2
Query: 326 EEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 451
+E++E F + DKDG+G I +++ ++T+L + +++ ++ M
Sbjct: 48 QELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHM 89
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 43.2 bits (97), Expect = 4e-05
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 293 MARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 472
M+ K + +EE E F +FD G+I +LR LGE LT E++ M+ D+
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML---DLA 57
Query: 473 G-DGQVNYEEF 502
G +G+V+ EEF
Sbjct: 58 GTNGKVSREEF 68
Score = 32.3 bits (70), Expect = 0.066
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 99 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 239
E E +EAF LFD G I ++L LG+N T+ +LQ M++
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLD 55
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Frame = +2
Query: 254 RNGTIDFPEFLTMMARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGE---- 421
+NG IDF EF+ ++ + + +++ F+++D D NG IS E+ ++ + +
Sbjct: 76 KNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGS 134
Query: 422 --KLTDEE------VDEMIREADIDGDGQVNYEEF 502
KL ++E V+++ D + DGQ+ EEF
Sbjct: 135 MVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 344 FRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 505
F VFD D NG+I E ++ ++++ + D+D +G ++Y+E +
Sbjct: 69 FNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEML 122
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 293 MARKMKDTDSEE--EIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 466
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 467 IDGDGQVNYEEFV 505
+D G+V E+FV
Sbjct: 65 VDSSGRVEPEDFV 77
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = +2
Query: 311 DTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 490
D + + E FR + + NG++S ++ V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 491 YEEF 502
++EF
Sbjct: 59 FDEF 62
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 32.7 bits (71), Expect = 0.050
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -1
Query: 478 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEILAD 332
V++ I L ++ L+ FLSE + +G+ DEA+ V+ ++AE+ D
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAELPPD 228
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 31.9 bits (69), Expect = 0.087
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 478 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEILAD 332
V++ I L ++ ++ FL E + Q+G+ +EAV VL E AE+ D
Sbjct: 184 VSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 84 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEV 245
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSI 593
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 401 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 499
V + E+ +EE DEM E D +G+G EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 353 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 466
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 228 LEVRLLWGSVLATSSRCPALWS*WCHR 148
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 353 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 466
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 263 TIDFPEFLTMMARKMKDTDSEEEIRED 343
T + PE + ++ K+KD + E + ED
Sbjct: 491 TSNIPEIIARLSEKLKDREESEAVTED 517
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 296 ARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 472
AR++K I + ++ D+ + +A EL V LG+ +TD VDE +A+++
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV---LGQNMTDINVDEEELDAELE 168
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 296 ARKMKDTDSEEEIREDFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 442
A K + + + + D + KD GF+ AEL + G+ DE +
Sbjct: 258 ALKQRVRKNNRQFQSDIDRYRKDPEGFMKPAELNEIPKPAGKAGQDEVI 306
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 593 ISIVLDLHFSSVCDKLNTVIVSVRKFAR 676
+ I++DLH S+ KLN+ +V + F +
Sbjct: 836 VLILIDLHKSTYSKKLNSYVVPMETFVK 863
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 490 IDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 389
+D++V +D+ +H L S LS HDV Q+
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQV 61
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 120 EAFSLFDKDGDGTITTKELGTVMR 191
+ F FD+D DG + +EL + R
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFR 334
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 341 PRGFLPRYPCPSSCAP-SLSRTRESLSCRFVRVY--FIDHVLK 222
PRG +P P PSS P S + T E S +Y +D VLK
Sbjct: 166 PRGLVPLLPPPSSSIPRSKAVTIEDPSIVRTNIYDPSLDDVLK 208
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 341 PRGFLPRYPCPSSCAPSLSRTRESL 267
P P P PSS APS+S R S+
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSV 1256
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 609 SNTMLILCVMKQNVYLNSLLFTHTLA 532
S T+L + +M QN +LN+ F H A
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKA 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,148
Number of Sequences: 5004
Number of extensions: 39419
Number of successful extensions: 156
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -