Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00732
         (386 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2C987 Cluster: Putative uncharacterized protein; n=1; ...    34   1.1  
UniRef50_Q4Z1H5 Cluster: Putative uncharacterized protein; n=2; ...    33   1.4  
UniRef50_Q5FRL7 Cluster: Phage tail sheath protein; n=2; Glucono...    31   7.7  
UniRef50_A6AYH0 Cluster: Transcriptional regulator; n=2; Vibrio ...    31   7.7  

>UniRef50_Q2C987 Cluster: Putative uncharacterized protein; n=1;
           Photobacterium sp. SKA34|Rep: Putative uncharacterized
           protein - Photobacterium sp. SKA34
          Length = 125

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 266 HVRSAPLISLIIELKKHYIKLQFYKRFAQVF 174
           HVR   L+   + +K+H IK+  Y+R AQVF
Sbjct: 95  HVRDERLVMFPVFIKRHLIKMDEYRRIAQVF 125


>UniRef50_Q4Z1H5 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 647

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
 Frame = -3

Query: 216 LHKITILQEVRSSFRGFLKHILNCVLVSINNISVHYSIAYDNINSV------HLLLLKHP 55
           ++K  ILQ++        K I+N  ++++ NIS  Y+ ++++INS       H LLL++ 
Sbjct: 475 INKKNILQKILKETIFINKEIINEYIINVTNISKFYNDSFEHINSKLRDFDRHNLLLQNK 534

Query: 54  LRVIF 40
           L + F
Sbjct: 535 LLIFF 539


>UniRef50_Q5FRL7 Cluster: Phage tail sheath protein; n=2;
           Gluconobacter oxydans|Rep: Phage tail sheath protein -
           Gluconobacter oxydans (Gluconobacter suboxydans)
          Length = 495

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 204 TILQEVRSSFRGFLKHILNCVLVSINNISVHYSIAYDNINS 82
           T+  ++RS+  GFL  +L+  ++ + N  + YS+  D+ N+
Sbjct: 410 TLFSDIRSTLLGFLSSLLSQGILGVQNGELPYSVVCDSSNN 450


>UniRef50_A6AYH0 Cluster: Transcriptional regulator; n=2; Vibrio
           parahaemolyticus|Rep: Transcriptional regulator - Vibrio
           parahaemolyticus AQ3810
          Length = 284

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 177 FRGFLKHILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPLRVIFLLVNINRD 16
           F+ +   + +  L SINN+SVH ++A  N+    LL L H  ++  ++ +I  D
Sbjct: 90  FKVYCSEVFSGSLSSINNVSVHEAVATKNL----LLELLHQQKIALVIDSIKSD 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,089,478
Number of Sequences: 1657284
Number of extensions: 5422596
Number of successful extensions: 14187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14186
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)