Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00732
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   3.1  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   5.5  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    24   7.2  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    24   7.2  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    24   7.2  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = -3

Query: 183 SSFRGFLKHILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPLRVIFLLVNIN 22
           S+ + F+++ L   L+  N +SV+YS  ++  +S    L+KH +  +F  V +N
Sbjct: 526 SAIKEFIEYFLCDQLM--NCLSVYYSKYFEGKDSKKFTLVKHFMNSLFGRVKLN 577



 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 183 SSFRGFLKHILNCVLVSINNIS 118
           S  R FL  I++CV+VSI   S
Sbjct: 396 SDRRSFLNLIMSCVMVSIQQSS 417


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 75  LLLLKHPLRVIFLLVNINRDLFQLN 1
           L LL HPLRV  LL  I+ +L+  N
Sbjct: 892 LALLDHPLRVCVLLAQIDCNLWIRN 916


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 3   LIEINPYLYSQVKISPEVDVSTV 71
           L  ++P LY Q++ S   D+STV
Sbjct: 92  LTSVDPVLYQQLEASSTNDISTV 114


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 210 YVMFFELNDEGDERCGPDMVR 272
           Y+   EL +EG +R GP ++R
Sbjct: 398 YITTQELTEEGIQRLGPTVIR 418


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 210 KITILQEVRSSFRGFLKHILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPL 52
           +I ILQ+  +  + +++  L      + N+     + Y  +NS+ + LL+HPL
Sbjct: 383 QINILQDSITYVKNYMEESLQKTYKPLPNL-----LQYLILNSISIFLLQHPL 430


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 216 LHKITILQEVRSSFRGFLKHILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPL 52
           LH   I +   S F  F      C+LV  N   V    AYD +  + L  L+ PL
Sbjct: 765 LHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQNAYDVL--IQLRKLESPL 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,964
Number of Sequences: 5004
Number of extensions: 25262
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)