Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00732
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0611 + 9842550-9843035,9844313-9844416,9844586-9844814,984...    30   0.56 
03_05_0374 - 23589944-23590432,23590551-23590961,23591404-235915...    28   3.0  

>03_02_0611 +
           9842550-9843035,9844313-9844416,9844586-9844814,
           9846121-9846270
          Length = 322

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = -3

Query: 339 TDKYYSSLLAYTSTVRHSS-LSRFAPCPVRTAHLPHH*AQKTLHKITILQEVRSSFRGFL 163
           T  +++++ AY  TV+  S ++     PV T  +     + + H    +  + ++    L
Sbjct: 125 TTPFFTAVFAYIMTVKRESWVTYLTLVPVVTGVMIASGGEPSFHLFGFIMCIGATAARAL 184

Query: 162 KHILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPLRVIFLL 34
           K +L  +L+S            + +NS++LLL   P+ VI LL
Sbjct: 185 KTVLQGILLSSEG---------EKLNSMNLLLYMAPIAVILLL 218


>03_05_0374 -
           23589944-23590432,23590551-23590961,23591404-23591535,
           23591885-23591962
          Length = 369

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 27  YSQVKISPEVDVSTVKGVP-N*YCHTQLNNGLKYYLLKPKRNLECV 161
           Y ++ +SPE    ++K V    +CH Q    L +Y+L+   +L+C+
Sbjct: 224 YLKIHLSPEHSHQSIKHVTVTGFCHKQELVELIFYILENATSLQCL 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,980,342
Number of Sequences: 37544
Number of extensions: 135189
Number of successful extensions: 297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)