Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00732
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27170| Best HMM Match : RVT_1 (HMM E-Value=1.3e-31) 29 1.8
SB_36168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 27 4.0
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_47606| Best HMM Match : 7tm_1 (HMM E-Value=0.0015) 27 5.3
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 27 7.1
SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2) 27 7.1
SB_18928| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 26 9.3
>SB_27170| Best HMM Match : RVT_1 (HMM E-Value=1.3e-31)
Length = 265
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 171 GFLK-HILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPL 52
GF K H + VL+ I + +HYS A+D + +L+ H L
Sbjct: 91 GFRKGHSTSSVLLGIRDALLHYSKAFDTVQFKSVLMKMHCL 131
>SB_36168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 373 LMFKS*KANVKYRQILFIITSLYVY 299
++ KS + +++YR+ILF +T L+ Y
Sbjct: 71 VLLKSIRGSLRYRRILFSVTLLFTY 95
>SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 11 NKSLFIFTSKNITRSGC---FNSKRCTELIL 94
N+SLFIF+ KNI R C SK E+ L
Sbjct: 49 NRSLFIFSEKNIIRRFCKRIVESKESAEIYL 79
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 327 YSSLLAYTSTVRHSSLSRFAPCPVRTA 247
Y+S +YTST ++S + + P P TA
Sbjct: 194 YTSTTSYTSTTSYTSTTSYTPTPSYTA 220
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 129 NNISVHYSIAYDNINSVHLLLLKHPLRVIFLLVNINRD 16
N+ + Y+I YD ++ VH H R + ++RD
Sbjct: 867 NSHTARYTIQYDTVHQVHARYNSHTARYMIQYDTVHRD 904
>SB_47606| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)
Length = 293
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 351 LMLNTDKYYSSLLAYTSTVRHSSLSRFAPCPVRT 250
L+ +Y++ ++A S HS + + +P PV T
Sbjct: 80 LVSKIKRYHTKVMANASNTNHSRIYKHSPLPVHT 113
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 232 MMREMSGADRTWCEPRERAMSYS 300
+++ SG + +WC+ ER +YS
Sbjct: 1200 VVQHRSGVEESWCKDNERCYAYS 1222
>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 1133
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 137 TKTQFRMCLRNPRKLERTSCKIVI 208
T QFR+CL+NP + C +++
Sbjct: 394 TNPQFRVCLKNPDDDDDELCTVIV 417
>SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)
Length = 474
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 105 IAYDNINSVHLLLLKHPLRVIFLLVNIN 22
IA++ I+ + LL+L H RV+ L + +N
Sbjct: 259 IAFNTISYLFLLVLSHMYRVVILQLGLN 286
>SB_18928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 186 RSSFRGFLKHILNCVLVSINNISVHYSIAYDNINSV 79
++S R FLK ++ V V ++ +HY I IN +
Sbjct: 80 KNSMRDFLKALVLTVSVQYCDLLIHYPITNHGINLI 115
>SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 30 SQVKISPEVDVSTVKGVPN*YCHTQLNN 113
SQ K+ ++VSTV N YC+ + +N
Sbjct: 168 SQAKVHKLLEVSTVTAKSNAYCYRETDN 195
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 327 YSSLLAYTSTVRHSSLSRFAPCPVRTA 247
Y+S +YTST ++S + + P P T+
Sbjct: 167 YTSTTSYTSTTSYTSTTSYTPTPSYTS 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,673
Number of Sequences: 59808
Number of extensions: 172425
Number of successful extensions: 418
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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