Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00732
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical pr...    30   0.65 
Z71266-2|CAA95841.2|  233|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    26   8.1  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    26   8.1  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    26   8.1  

>U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical
           protein W08A12.4 protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 162 KHILNCVLVSINNISVHYSIAYDNINSVHLL 70
           KH+L  +L ++ N S + S+ YDN N   LL
Sbjct: 241 KHVLQILLKNMENESSNMSVMYDNTNKSFLL 271


>Z71266-2|CAA95841.2|  233|Caenorhabditis elegans Hypothetical
           protein R06C7.2 protein.
          Length = 233

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 90  INSVHLLLLKHPLRVIFLLVNINRDLFQ 7
           INS+ L L   PL+++F L++ N +L +
Sbjct: 109 INSLELKLENLPLQILFFLISENDELLE 136


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 222 KTLHKITILQEVRSSFRGF-LKHILNCVLVSINNI 121
           K L  + +L+ +R+  R   LKH++ CV+V++  I
Sbjct: 893 KILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTI 927


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 222 KTLHKITILQEVRSSFRGF-LKHILNCVLVSINNI 121
           K L  + +L+ +R+  R   LKH++ CV+V++  I
Sbjct: 893 KILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTI 927


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 222 KTLHKITILQEVRSSFRGF-LKHILNCVLVSINNI 121
           K L  + +L+ +R+  R   LKH++ CV+V++  I
Sbjct: 893 KILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTI 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,587,729
Number of Sequences: 27780
Number of extensions: 138971
Number of successful extensions: 349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)