Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00732
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05820.1 68418.m00640 phosphate translocator-related low simi...    30   0.47 
At2g39060.1 68415.m04801 nodulin MtN3 family protein similar to ...    27   5.8  
At4g30150.1 68417.m04287 expressed protein                             26   7.6  
At3g48570.1 68416.m05303 protein transport protein SEC61 gamma s...    26   7.6  

>At5g05820.1 68418.m00640 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           glucose-6-phosphate/phosphate-translocator precursor
           [Zea mays] GI:2997589; contains Pfam profile PF00892:
           Integral membrane protein
          Length = 309

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = -3

Query: 339 TDKYYSSLLAYTSTVRHSS-LSRFAPCPVRTAHLPHH*AQKTLHKITILQEVRSSFRGFL 163
           T  +++++ AY  T +  + L+ F   PV T  +     + + H    L  + ++    L
Sbjct: 112 TTPFFTAVFAYLMTRKKEAWLTYFTLVPVVTGVVIASGGEPSFHLFGFLMCIAATAARAL 171

Query: 162 KHILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPLRVIFLL 34
           K +L  +L+S            + +NS++LLL   P+ V+ LL
Sbjct: 172 KSVLQGILLSSEG---------EKLNSMNLLLYMAPIAVVLLL 205


>At2g39060.1 68415.m04801 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 258

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 128 FIETKTQFRMCLRNPRKLERTSCKIVILCNV 220
           FIE    F   L  PR+ + ++ K++++CN+
Sbjct: 80  FIEISYLFLYILYAPREAKISTLKLIVICNI 110


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 168 FLKHILNCVLVSINNISVHYSIAYDNINSVHLLLLKHPLRVIFLLVNINRDLFQ 7
           FL+ I   ++   + +  H    YDN + +H+LL K  +  I  L++I  ++ +
Sbjct: 551 FLRTIFKTIVSVASELKKH--CPYDNGSEMHVLLAKELVTAIGYLLHIEYEIIE 602


>At3g48570.1 68416.m05303 protein transport protein SEC61 gamma
           subunit, putative similar to Swiss-Prot:Q19967 protein
           transport protein SEC61 gamma subunit [Caenorhabditis
           elegans]
          Length = 69

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -3

Query: 282 LSRFAPCPVRTAHLPHH*AQKTLHKITILQEVRSSFRGFLKHILNCVLVSINNISV 115
           L  FA   VR     H   +K   K+ +   +     GF+   +  V + INNI V
Sbjct: 11  LRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIPINNIIV 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,869,370
Number of Sequences: 28952
Number of extensions: 120450
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)