Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00731
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 29 0.45
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.2
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 4.2
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 26 5.5
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 5.5
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 26 5.5
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 7.3
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 9.7
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 25 9.7
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 29.5 bits (63), Expect = 0.45
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 222 PIYSLHSHWLQTDTDCPSDKSCINSKCDTPCNADICQEPAQCKVHLHQA 368
PIYSL WL +T C SD+S +K D+CQ P + L +A
Sbjct: 1365 PIYSLPQDWLWCETWC-SDESLKTAK-----TIDLCQNPLTKEKKLDRA 1407
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 306 YHIWN*YMIYQMDNLCQSAANGSASYRWVSNCTDLTATGCTMF*SITFSRL 154
YHIW ++Y D +A+ A++ SN L A G ++ FSR+
Sbjct: 430 YHIWQAMLLYVTDAYPNVSASAVAAFELPSN---LGAVGFIHLSALMFSRM 477
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 258 DTDCPSDKSCINSKCDTPCNADICQEPAQCKVHLHQA 368
D S SC+ +T N DIC++ CK HQA
Sbjct: 757 DASLSSADSCLIC-LETYTNGDICRKLQACKHFFHQA 792
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 127 KQGHNAYLYTFRRQHNENQIGIVFHSNLTKHPL 29
K+ H AY Y F + N G + + KHP+
Sbjct: 406 KKQHEAYAYPFYKPVNPTACGCPDYFKVIKHPM 438
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -1
Query: 295 ELIHDLSDGQSVSVCSQWECKL*MGFQLYRSYSDRMHDVLIHNIQPIARTY*HLPNKQGH 116
ELI D G+++ C + L G Y++YS R LIH R HL + G
Sbjct: 460 ELIKDHDFGKALKPCQTKKLILVGGENYYKNYSAR----LIHEYHIPLRLAKHLSHNYGS 515
Query: 115 NAYL 104
A L
Sbjct: 516 RAPL 519
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 82 CADDETCINRRCVPACSVNANTCGQSAE 165
C CINR C+ N CG S +
Sbjct: 143 CGHGSNCINRMTSIECTDEDNVCGPSCQ 170
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 223 PSIACTPIGCRLTQIVHLINHVSIPNVIRPAMQIFARNQLSARYIYIKLIA 375
P+IA P+ + + + + +VS+P+++RP ++ N Y Y+ +A
Sbjct: 158 PAIAAIPL-LVVYYVDYGVTYVSVPSIVRPFLKRSLINLGFLYYFYMAAVA 207
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 511 VDTRHGLTHL*LRHPVPEGQSISLIHCG 428
+D R G ++HP + +S IHCG
Sbjct: 282 IDFRIGFIEKAVKHPNADSLYVSTIHCG 309
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -2
Query: 375 RNELDVNVPCTELVPGKYLHCRAYHIWN*YMIYQMDNLCQSAANGSASYRW 223
R ++ NVP V Y HC I N Q D S ++ + W
Sbjct: 648 RKAVEPNVPVNTHVKSYYGHCNVESIKNVNFYGQNDEYVMSGSDDGRFFIW 698
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 264 DCPSDKSCINSKCDTPCNADICQEPAQCKV 353
DC + IN P ++CQ+ QCK+
Sbjct: 167 DCQREYLSINCDSPGPAIFEVCQKLKQCKM 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,773
Number of Sequences: 5004
Number of extensions: 70648
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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