Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00731
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 30 1.6
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 30 1.6
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 30 1.6
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 29 3.6
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 29 3.6
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 29 3.6
At1g62530.1 68414.m07055 hypothetical protein 28 4.8
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident... 28 6.3
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 28 6.3
At3g18215.1 68416.m02317 expressed protein contains Pfam profile... 28 6.3
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 28 6.3
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 28 6.3
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 28 6.3
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 28 6.3
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +3
Query: 282 SCINSKCDTPCNADICQEPAQCKVHLHQAHCACPPGFTNTGKECRKTEGPQC--ISDIDC 455
+C + + PC + Q+P +C+ H C G +C P C + D +
Sbjct: 463 ACGETHFEVPCGTETNQKPPRCRKLCHITP-LCRHGQNQKPHKCHYGACPPCRLLCDEEY 521
Query: 456 PSGTGCLNYRCVNP 497
P G C RC P
Sbjct: 522 PCGHKC-KLRCHGP 534
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 360 HQAHCACPPGFTNTG-KECRKTEGPQCISDIDCPSGTGCLNYRCVN 494
H C CPPGF G KEC+ +C C C + +C N
Sbjct: 496 HSKGCKCPPGFIGDGLKECKDVN--ECEEKTACQ----CRDCKCKN 535
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 572 CECLPGYKGNALQECKPYQTVAKCIERS 655
C+C PG+ G+ L+ECK V +C E++
Sbjct: 500 CKCPPGFIGDGLKECK---DVNECEEKT 524
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 7 CACRQGFIGDASSGCYEI-QCQSDSHC-ADDETCINRRCVPACSVNAN 144
C C GFIGD C ++ +C+ + C D C N CS + +
Sbjct: 500 CKCPPGFIGDGLKECKDVNECEEKTACQCRDCKCKNTWGSYECSCSGS 547
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 354 HLHQAHCACPPGFTNTGKECRKTEGPQCISDIDCPSGTGCLN 479
+L + C CPPGF G +C + + S C G C N
Sbjct: 492 NLETSGCRCPPGFKGDGLKCEDIDECKEQSACQC-DGCNCKN 532
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 399 TGKECRKTEGPQCISDIDCPSGTGCLNYRCVNPCLVSTHVVKMRSARL 542
T K R +G CI I PSG G + RC + + T+ + RS L
Sbjct: 557 TTKHPRHRDGCTCIICIQSPSGIGPKHDRCCSCAVCDTNKRRRRSLLL 604
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.7 bits (61), Expect = 3.6
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 572 CECLPGYKGNALQECK 619
CEC PG+KG+ +++C+
Sbjct: 501 CECPPGFKGDGVKKCE 516
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.7 bits (61), Expect = 3.6
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 572 CECLPGYKGNALQECK 619
CEC PG+KG+ +++C+
Sbjct: 501 CECPPGFKGDGVKKCE 516
>At1g62530.1 68414.m07055 hypothetical protein
Length = 282
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = +3
Query: 183 SCILSL*DRYSWKPIYSLHSHWLQT--DTDCP-SDKSCI----NSKCDTPCNADICQEPA 341
SC+L L +++P+ H L + DC S SC NS+ + + ++ Q A
Sbjct: 87 SCLLDLNKPPAYEPVSIDHQCGLDGVHEKDCSASPASCCTAENNSRTEGEDSCEVIQMAA 146
Query: 342 QCKVHLHQAHCACPPGFTNTGKECRKTE 425
+C VH+ G G+ C E
Sbjct: 147 ECLVHISAVSHNQSHGVQEPGRSCDSFE 174
>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
identical to F-box protein family, AtFBL4 (GP:21536497)
[Arabidopsis thaliana]; similar to grr1 GI:2407790 from
[Glycine max]
Length = 610
Score = 27.9 bits (59), Expect = 6.3
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = +1
Query: 43 SGCYEIQCQSDSHCADDETCINRRCVPACSVNANTCGQSA---ECYGLEHRASCRCKIGT 213
S CY + C+ A + R + C N T G A C L+ A C+
Sbjct: 328 SDCYFVSCKGLEAIAHGCKELERVEINGCH-NIGTRGIEAIGKSCPRLKELALLYCQ--R 384
Query: 214 VGNPSIACTPIGCRLTQIVHLINHVSIPNVIRPAMQIFARN 336
+GN ++ GC+ +I+HL++ I ++ ++ RN
Sbjct: 385 IGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRN 425
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 7 CACRQGFIGDASS-GCYEIQCQSDSHCADDETCINRRCVPACSVNANTC 150
C C + G S GC + + C DD + + P C + ANTC
Sbjct: 375 CCCLYEYNGKCYSWGCCPYESAT---CCDDGSSCCPQSYPVCDLKANTC 420
>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
PF04654: Protein of unknown function, DUF599
Length = 244
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 339 LVPGKYLHCRAYHIWN*YMIYQMDNLCQSAANGSASYRWV 220
LVP + AYH+W Y I L A N + +WV
Sbjct: 11 LVPTGLVVMVAYHVWLVYAILHRPKLTVIALNAESRRQWV 50
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 7 CACRQGFIGDASSGCYEIQCQSDSHCADDETCINRRCVPACSVNANTCGQSAEC 168
C C GF GD + C +I + C + + C +C P CS NT G S EC
Sbjct: 501 CECPPGFKGDGTKKCEDI-----NECKEKKAC---QC-PECSCK-NTWG-SYEC 543
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 572 CECLPGYKGNALQECK 619
CEC PG+KG+ ++C+
Sbjct: 501 CECPPGFKGDGTKKCE 516
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 7 CACRQGFIGDASSGCYEIQCQSDSHCADDETCINRRCVPACSVNANTCGQSAEC 168
C C GF GD + C +I + C + + C +C P CS NT G S EC
Sbjct: 501 CECPPGFKGDGTKKCEDI-----NECKEKKAC---QC-PECSCK-NTWG-SYEC 543
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 572 CECLPGYKGNALQECK 619
CEC PG+KG+ ++C+
Sbjct: 501 CECPPGFKGDGTKKCE 516
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 DCPSDKSCINSKCDTPCNADICQEPAQCKVHLHQAHCA--CPPGFTN 398
DC +DK+C N + D C+ C + H A CP G +N
Sbjct: 152 DCTNDKACKNCRTSGHIARD-CRNDPVCNICSISGHVARHCPKGDSN 197
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 106 NRRCVPACSVNANTCGQSAECYGLEHRAS--CRCKIGTVGNP 225
N+ C A S CG+++ CY R C+C G GNP
Sbjct: 246 NQTCEQAGSTRI--CGKNSSCYNSTTRNGYICKCNEGYDGNP 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,526
Number of Sequences: 28952
Number of extensions: 383240
Number of successful extensions: 981
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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