Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00730
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    30   0.29 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    29   0.90 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    29   0.90 
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    26   6.3  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    26   6.3  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   8.4  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.4  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -2

Query: 252 LNFQNSYK*FANGHFPK*TQFKSIFYWHLFYLPELFWSSLVNFFKGFYDLVNKTFRSRQK 73
           LN  N+Y  +AN    +  Q     Y HL+ L   F+    +FF  F D      R   K
Sbjct: 400 LNIMNAYV-YANESLLQLLQSSQSLYAHLYSLKHYFFLDQSDFFTTFLDNAQHELRKPAK 458

Query: 72  Y 70
           Y
Sbjct: 459 Y 459


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 342 NVLQRTYKDLSDVTPF----LSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIEKF 509
           + +   YK ++D+ P     L+ +FN+AA    S    +LIDL + IS +  + Y +  F
Sbjct: 636 DTIHSVYKKVTDLLPDSLNDLAGSFNIAADGISSPMAYSLIDLLIVISPYLNQDYAVTLF 695


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 318 SISYEKPTNVLQRTYKDLSDVTPFLSNTFNLAAYVNHSKTLQNLI 452
           S++ E+   +     K  SD +  + N+FN+ A  N    LQN I
Sbjct: 53  SVAKERQKKISDPARKFFSDFSKLIDNSFNVFAKKNEGDLLQNAI 97


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 518 DFEKNMKSHIVFLSDYVNMEQMGEFFTKNPMIFCEHLEDLKTRVNYLESQR-FSDSEI 688
           DF+   +  +     +  ++Q      ++ M +   ++DLKT++N +E+ R  +D +I
Sbjct: 67  DFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKI 124


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 236 LINNLQMAISQNKLNLKVYSTGTFSIFQSCF 144
           ++N+ Q+ + Q   N  VYS GT S F +C+
Sbjct: 1   MMNDSQVQLFQ-LYNYSVYSNGTISNFTNCY 30


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 518 DFEKNMKSHIVFLSDYVNMEQMGEFFTKNPMIFCEHLEDLKTRVNYLESQR-FSDSEI 688
           DF+   +  +     +  ++Q      ++ M +   ++DLKT++N +E+ R  +D +I
Sbjct: 67  DFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKI 124


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +2

Query: 560 DYVNMEQMGEFFTKNPMIFC--EHLEDLKTRVNYLESQRFSDSEIKRI 697
           DYV+ + +G+ F+KN  + C   HL D + R  Y  ++R + S+++++
Sbjct: 305 DYVSSDNIGDIFSKN-FLHCLINHLSD-EDRYLYRAAKRVT-SKLEKV 349


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 626 LEDLKTRVNYLESQRFSDSEIKRII 700
           LEDL    NY ES   SDS +  ++
Sbjct: 121 LEDLLVSENYQESTAISDSSVSSVL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,412
Number of Sequences: 5004
Number of extensions: 60531
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)