Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00730
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327...    29   5.0  
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543...    28   6.6  
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949...    28   8.7  

>09_02_0515 +
           10121849-10122149,10132151-10132187,10132314-10132790,
           10133184-10133733
          Length = 454

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 300 GESEICSISYEKPTNVLQRTYKDLSDVTPFLSNT 401
           GES+I  I+Y   +NVL  T  DL   T  + NT
Sbjct: 22  GESKIVRINYINTSNVLAVTLGDLKTSTSLILNT 55


>02_05_0746 -
           31451303-31453168,31453243-31453357,31454296-31454351,
           31455057-31455138,31455484-31455517,31455912-31456016,
           31456108-31456387
          Length = 845

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 22  SSAVIGKLP*RSTSAVIFLSRPKGLIYQVIKSLKKINKTRPKQLWKIEKVPVEYTFKLSL 201
           SS+V GKL  R+ S++     P G +  +   L  + KTRP+    +  V       L+L
Sbjct: 209 SSSVTGKLKSRAESSLKTYHVPIGYLKTIEDILSSVTKTRPQWTRLVSAVDHRVDRSLAL 268

Query: 202 FWEMAI 219
               AI
Sbjct: 269 LRPQAI 274


>02_02_0365 +
           9488328-9488583,9489343-9489495,9491159-9491451,
           9491538-9492105,9492503-9493011
          Length = 592

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 91  GLIYQVIKSLKKINKTRPKQLWKIEKVPVEYTFK 192
           G + Q+I+S KK+N   P+QL+ ++ V    +F+
Sbjct: 377 GSLGQIIQSRKKLNGHNPQQLFSMDNVDSSDSFQ 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,438,636
Number of Sequences: 37544
Number of extensions: 300086
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)