Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00730
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4725| Best HMM Match : Mt_ATP-synt_D (HMM E-Value=1.4)              32   0.41 
SB_20433| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_18292| Best HMM Match : UPF0041 (HMM E-Value=4.1)                   31   1.3  
SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36583| Best HMM Match : rve (HMM E-Value=9.4e-19)                   29   5.1  
SB_7109| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0029)                28   6.7  
SB_58119| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_17720| Best HMM Match : Atracotoxin (HMM E-Value=3.2)               28   8.9  

>SB_4725| Best HMM Match : Mt_ATP-synt_D (HMM E-Value=1.4)
          Length = 465

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 416 ICKSF*DITK-SHRPERQH**I*EETLHY*EVLKLDFEKNMKSHIVFLSDYVNMEQMGEF 592
           I ++F  IT  SH  E+QH    E  L     ++  F  N    I FL DYV + ++ E 
Sbjct: 381 ISENFMQITALSHMAEQQHNRRIERALRVSSRMRRSFSSN--KFIDFL-DYVRVRRVRER 437

Query: 593 FTKNPMIFCEHLE 631
           F++  + F EH+E
Sbjct: 438 FSERSLRFVEHME 450


>SB_20433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 265 LDPCVAIYKLNLVKVKFAVLVMKNPPMYF 351
           LD  VA+Y  NLV      LVM +PP++F
Sbjct: 59  LDSLVAMYCRNLVDKDMGTLVMSSPPVHF 87


>SB_18292| Best HMM Match : UPF0041 (HMM E-Value=4.1)
          Length = 377

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 127 INKTRPKQLWKIEKVPVEYTFKLSLFWEMAICKLFIRILKIQKLFLLDPCVAIYKLNLVK 306
           + K RP  +W+I K   E T K SL    +  K  +    ++  F+L+P   +Y++    
Sbjct: 217 VEKVRPNYVWRIHKTGDEQTGKRSLLAXDSAIKAEV----VRDKFVLEPWAVVYRVEYPN 272

Query: 307 V 309
           V
Sbjct: 273 V 273


>SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 360 YKDLSDVTPFLSNT-FNLAAYVNHSKTLQNLIDLNVNISKFEKK 488
           Y +  DV+  L +T  +LAAY  H+K ++ L+ L  N  K E K
Sbjct: 666 YVNSLDVSDILGDTPLHLAAYFGHTKAVETLLKLGAN-PKMEDK 708


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 530 NMKSHIVFLSDYVNMEQMGEFFTKNPMIFCEHLEDLKTRVN 652
           N+K+  V + +YVN +   E +TK P + C      + R+N
Sbjct: 795 NIKTFGVIVQEYVNHDSF-EMYTKRPPLTCSSCTSSRRRIN 834


>SB_36583| Best HMM Match : rve (HMM E-Value=9.4e-19)
          Length = 435

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 115 SLKKINKTRPKQLWKIEKVPVEY-TFKLSLFWEMAICKLFIRILKIQKLFLLDPCVAIYK 291
           +LK  N+TRPKQ  +  + P      + + F +  +C     +    +L   D CVA+++
Sbjct: 87  ALKLYNQTRPKQSLESMRAPEPCPALRCAEFTQQCVCTYAEGVADGNRLLETDTCVAMHR 146


>SB_7109| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0029)
          Length = 232

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 530 NMKSHIVFLSDYVNMEQMGEFFTKNPMIFCEHLE 631
           N K H+VFL++  N+    +  T +P  FC+  E
Sbjct: 42  NCKGHVVFLAETYNLSIEKDDQTIHPSKFCQRFE 75


>SB_58119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 217 ICKLFIRILKIQKLFLLDPCVAIYKLNLVKVKFAVLVMKNP 339
           +C+ F   L+    FL  P + IYKL ++  K A+L  K P
Sbjct: 33  VCRQFTDYLQAISRFLWVPFLRIYKLFVIFEKSAILSGKGP 73


>SB_17720| Best HMM Match : Atracotoxin (HMM E-Value=3.2)
          Length = 389

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 310 KFAVLVMKNPPMYFNEHIKIYLM 378
           +F+ L + +PPMY++E  K YL+
Sbjct: 350 EFSSLGLTDPPMYYDEQYKCYLI 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,969,457
Number of Sequences: 59808
Number of extensions: 375557
Number of successful extensions: 895
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)