Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00730
         (730 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051744-1|AAK93168.1|  354|Drosophila melanogaster LD27042p pro...    82   7e-16
AE014296-3392|AAF51620.1|  354|Drosophila melanogaster CG5047-PA...    82   7e-16
DQ414686-1|ABD75710.1|  354|Drosophila melanogaster MTERF3 protein.    81   1e-15

>AY051744-1|AAK93168.1|  354|Drosophila melanogaster LD27042p
           protein.
          Length = 354

 Score = 82.2 bits (194), Expect = 7e-16
 Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = +2

Query: 506 VLKLDFEKNMKSHIVFLSDY-VNMEQMGEFFTKNPMIFCEHLEDLKTRVNYLESQRFSDS 682
           VLKLDFEKN+K +I FL D  V+ +  G  FTKNP++F E L+DL+TRVNYL+S+RFSD 
Sbjct: 116 VLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKNPLLFKEDLDDLQTRVNYLKSKRFSDE 175

Query: 683 EIKRIISK 706
             +RI+++
Sbjct: 176 ARQRILTQ 183



 Score = 37.1 bits (82), Expect = 0.024
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +3

Query: 399 TFNLAAYVNHSKTLQNLIDLNVNISKFEKK 488
           +FNLAAYVN+S TLQ  + L V++   E++
Sbjct: 80  SFNLAAYVNNSSTLQQFLSLGVDLHSIERR 109


>AE014296-3392|AAF51620.1|  354|Drosophila melanogaster CG5047-PA
           protein.
          Length = 354

 Score = 82.2 bits (194), Expect = 7e-16
 Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = +2

Query: 506 VLKLDFEKNMKSHIVFLSDY-VNMEQMGEFFTKNPMIFCEHLEDLKTRVNYLESQRFSDS 682
           VLKLDFEKN+K +I FL D  V+ +  G  FTKNP++F E L+DL+TRVNYL+S+RFSD 
Sbjct: 116 VLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKNPLLFKEDLDDLQTRVNYLKSKRFSDE 175

Query: 683 EIKRIISK 706
             +RI+++
Sbjct: 176 ARQRILTQ 183



 Score = 37.1 bits (82), Expect = 0.024
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +3

Query: 399 TFNLAAYVNHSKTLQNLIDLNVNISKFEKK 488
           +FNLAAYVN+S TLQ  + L V++   E++
Sbjct: 80  SFNLAAYVNNSSTLQQFLSLGVDLHSIERR 109


>DQ414686-1|ABD75710.1|  354|Drosophila melanogaster MTERF3 protein.
          Length = 354

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
 Frame = +2

Query: 506 VLKLDFEKNMKSHIVFLSDY-VNMEQMGEFFTKNPMIFCEHLEDLKTRVNYLESQRFSDS 682
           VLKLDFEKN K +I FL D  V+ +  G  FTKNP++F E L+DL+TRVNYL+S+RFSD 
Sbjct: 116 VLKLDFEKNAKPYITFLVDQGVSPDDFGRMFTKNPLLFKEDLDDLQTRVNYLKSKRFSDE 175

Query: 683 EIKRIISK 706
             +RI+++
Sbjct: 176 ARQRILTQ 183



 Score = 37.1 bits (82), Expect = 0.024
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +3

Query: 399 TFNLAAYVNHSKTLQNLIDLNVNISKFEKK 488
           +FNLAAYVN+S TLQ  + L V++   E++
Sbjct: 80  SFNLAAYVNNSSTLQQFLSLGVDLHSIERR 109


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,955,720
Number of Sequences: 53049
Number of extensions: 558815
Number of successful extensions: 1078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)