Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00730
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical p...    44   1e-04
AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    31   1.1  

>Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical
           protein C50F4.12 protein.
          Length = 439

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 506 VLKLDFEKNMKSHIVFLSDYVNMEQ--MGEFFTKNPMIFCEHLEDLKTRVNYLESQRFSD 679
           +L+L  E +++  I  + + +  E   +G + T+NP    + + D++TR+NYLE ++F+ 
Sbjct: 180 LLRLQIE-DVRQKIELMQNEIGFENEAIGPYLTRNPFFLIQDVNDMQTRLNYLELKKFTK 238

Query: 680 SEIKRIISK 706
           SE  +I+ +
Sbjct: 239 SERLKIVDE 247



 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/67 (26%), Positives = 36/67 (53%)
 Frame = +3

Query: 282 YLQVEPGESEICSISYEKPTNVLQRTYKDLSDVTPFLSNTFNLAAYVNHSKTLQNLIDLN 461
           Y ++E  E E+      +P +       D S++ P  S++  +  +VNHS  L+ L+D+ 
Sbjct: 107 YRKIEYTEGELDHTDLTEPASPSNPHPFDPSELPPVHSHS--IVPFVNHSPLLRFLVDIG 164

Query: 462 VNISKFE 482
           V++++ E
Sbjct: 165 VDLAEIE 171


>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 195 QFKSIFYWHLFYLPELFWSSLVNFFKG 115
           QF  +F   LFYLP L+WS+ VN++ G
Sbjct: 103 QFILVFLAFLFYLPYLYWST-VNWWSG 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,754
Number of Sequences: 27780
Number of extensions: 321873
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)