Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00730
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55580.1 68418.m06929 mitochondrial transcription termination...    31   0.78 
At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS cla...    28   5.5  
At5g24790.1 68418.m02927 expressed protein contains Pfam profile...    27   9.6  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    27   9.6  
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla...    27   9.6  

>At5g55580.1 68418.m06929 mitochondrial transcription termination
           factor family protein / mTERF family protein weak
           similarity to mtDBP protein [Paracentrotus lividus]
           GI:4584695; contains Pfam profile PF02536: mTERF
          Length = 496

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 503 EVLKLDFEKNMKSHIVFLSDY-VNMEQMGEFFTKNPMIFCEHLED-LKTRVNYL-ESQRF 673
           ++L+   E N+K+HI FL    +   ++G+     P +F   +E+ L+  + YL E    
Sbjct: 245 QILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGI 304

Query: 674 SDSEIKRII 700
            ++++ +++
Sbjct: 305 KETDVGKVV 313


>At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 315 CSISYEKPTNVLQ----RTYKDLSDVTPFLSNTFNLAAYVNHSKTLQNLIDLNVNIS 473
           CS+ +E   N++     +  K+L  VT  +SN  +L     H K L   +DLN N S
Sbjct: 151 CSLKWEDEANLVDEIADKISKNLMTVTT-ISNGRDLVGIDTHMKALNKKLDLNSNKS 206


>At5g24790.1 68418.m02927 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 246

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 548 LYGFSYFSQSLILKLLNNVRFLLKFTNVD 462
           ++ FS+F  SL ++ LN V  L+   N+D
Sbjct: 127 IFIFSFFFHSLSIRFLNQVAILVNIPNLD 155


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 584  GEFFTK-NPMIFCEHLEDLKTRVNYLESQ 667
            GE FT  NP +  E LE LKT++  LES+
Sbjct: 2644 GEDFTDINPEVAEEALEQLKTKLGLLESE 2672


>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 267 RSMCGYLQVEPGESEICSISYEKPTNVLQRTYKDLSDVTPFLSNTFNLAAYVNHSKTLQN 446
           R++     +    S  C    +    +  +  K+L  VT  +SN  NL     H K L  
Sbjct: 139 RALTSLASISGDCSSKCEDEAKLVDEIADKISKNLMTVTT-ISNGKNLVGIDTHMKALNK 197

Query: 447 LIDLNVNIS 473
            +DLN N S
Sbjct: 198 KLDLNSNKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,418,557
Number of Sequences: 28952
Number of extensions: 283960
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)