Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00729
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    28   0.066
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    28   0.066
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +2

Query: 2   FLKMASVATVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVE 145
           FLK+ ++ TV   +LG  V++K   +  TSQ  IK   T +Y N K++
Sbjct: 59  FLKVVTIITVFFVVLGAAVVSKGTTLFMTSQ--IKKNVTRAYCNKKID 104


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +2

Query: 2   FLKMASVATVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVE 145
           FLK+ ++ TV   +LG  V++K   +  TSQ  IK   T +Y N K++
Sbjct: 59  FLKVVTIITVFFVVLGAAVVSKGTTLFMTSQ--IKKNVTRAYCNKKID 104


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 458 AGNAVRYHLCRRKGEIRQPEINIGTIPGAGGTQ--RLPRYVGKSKAMEIVLTGNFFDAHE 631
           +G  ++Y     +      E  +GT+ GAGGT    +   V  S  + IV  G F +   
Sbjct: 265 SGQVMKYAALATENFSSLLEPAVGTMTGAGGTAIVSISTSVSTSVYLAIVFNGLFTEEDV 324

Query: 632 AE-KMGLVSKVFPVEKLLEETIKL 700
           A+  + +   +   + +L+E +++
Sbjct: 325 ADVPINVTLSLDEKKYILQEVVRV 348


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 474 RTALPAHNHPQE 439
           RT LP H HPQ+
Sbjct: 374 RTNLPTHRHPQD 385


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 714 PILSASLMVSSKSFSTGNTLLTRPIFS-AS*ASKKFPVNTISIAFDLPTYLGRRWVPPAP 538
           PILS  +   + S+ T +     P     S      P++T S+  D   +     +PP P
Sbjct: 175 PILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP 234

Query: 537 GMVP 526
           G+ P
Sbjct: 235 GLSP 238


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 714 PILSASLMVSSKSFSTGNTLLTRPIFS-AS*ASKKFPVNTISIAFDLPTYLGRRWVPPAP 538
           PILS  +   + S+ T +     P     S      P++T S+  D   +     +PP P
Sbjct: 67  PILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP 126

Query: 537 GMVP 526
           G+ P
Sbjct: 127 GLSP 130


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 395 LQLWETHHCRC*WFRSWGWL*AGN 466
           L++   HHCR  +  S GW  AG+
Sbjct: 69  LEMTLAHHCRFKFSSSVGWSPAGH 92


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 523 HWHHPRSRRHPASSQIRWQVESNG 594
           HWH   S+  P  SQ   Q+  NG
Sbjct: 273 HWHLTDSQSFPLVSQRVPQLAKNG 296


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 498 AKFGNPRSTLAPSPEPEAPSVFPDTLASRK 587
           A   +  S  +PS  PE  SV P +L  R+
Sbjct: 207 ASTASSASNYSPSQSPEPESVRPLSLVVRR 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,944
Number of Sequences: 336
Number of extensions: 4111
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)