Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00729
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 46 4e-06
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 29 0.88
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 27 2.0
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom... 27 2.7
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 27 3.5
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 6.2
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 6.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.2
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 8.2
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 8.2
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 46.4 bits (105), Expect = 4e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Frame = +3
Query: 261 DSNIAAIIIT-GNEKAFAAGADIKEMQNNTYSSN---TKQGFLREWE---DISNCGKPII 419
+SN+A +II GN ++F++G DIK + + F +E+ ++ KP++
Sbjct: 97 ESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVV 156
Query: 420 AAVNGFALGGGCELAMLCDIIYAGEKAKFGNPRS 521
A +NG +GGG LAM A E F P +
Sbjct: 157 ALMNGITMGGGSGLAMHVPFRIACEDTMFAMPET 190
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 359 VAAVCIVLHLLNISTSRKSLLVTS-DDDGSNVAVGVKSLTAFPSSTNNGLHRAFSASGG 186
+ A+ + + LN S S K +++ D ++ ++TA+ S+ +N L RAF G
Sbjct: 1078 ITAIQLHMSKLNKSNSSKKIIIDPLKDSMKDLVQHAFTITAYDSNIHNALTRAFKHENG 1136
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 19 CRYCNSCFA-GKECTEQVQSGIRNKPSIYKVL 111
C+ CNS GK C+ + + R PSI +VL
Sbjct: 59 CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
>SPAP11E10.01 |||ornithine cyclodeaminase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = -3
Query: 437 ETINSGNDGFPTVGDVLPFAKETLFCVAAVCIVLHLLNISTSRKSLLVTSDDDGSNVAVG 258
ET++S P + + E + C + + N S++ ++L+ +G
Sbjct: 11 ETLSSSLGWIPLINALREIFTENVVCPTRLHYPIDEDNPSSTANNILLIMPCWIPGKFLG 70
Query: 257 VKSLTAFPSSTNNGL 213
VK + FP +T +GL
Sbjct: 71 VKQVNVFPENTKHGL 85
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 440 SWGWL*AGNAVRYHLCRRKGEIRQPEINIGTIPGAG 547
SWG+ GN+ C + GE PE G I G G
Sbjct: 150 SWGY--HGNSGEKFNCSKTGEAYGPEFTTGDIIGCG 183
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 376 RKPCFVLLLYVLFCISLISAP 314
RKP F LLY ++ +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 434
K M+++ S N K F ++ WED+ +C K + NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 475 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 386
S+S SS P A+PLTA +GF + S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 478 SSMPAKRRNSATRDQHWHHPRSRRHPASSQIRWQVE 585
S P K NSA D H P +I W+ E
Sbjct: 98 SDRPNKNENSAGEDNHSSPPSKNPQQERMKIAWRYE 133
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 514 RDQHWHHPRSRRHPASSQIRWQVESNGDRV 603
RD + RSR+ ++ R++ E NGD+V
Sbjct: 56 RDSEYFRGRSRKFQIQAEGRFKKEYNGDQV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,336
Number of Sequences: 5004
Number of extensions: 69089
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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