Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00729
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = -2

Query: 582 DLPTYLGRRWVPPAPGMVPMLI----SGCRISPFRR 487
           D   YL  RW  P     P+L+    +G RI P +R
Sbjct: 435 DAKKYLPERWTTPTTPHSPLLVAPFGAGRRICPGKR 470


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 409 FPQLEMSSHSRRKPCFVLLLYVLFCISLISAPAAKAF 299
           +P +      RR+P F +   +L CI LI++ A   F
Sbjct: 200 YPDITYEIRLRRRPMFYVFNLILPCI-LINSVALLVF 235


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 315 GADIKEMQNNTYSSNTKQ 368
           GA++KE+  NT+  N  Q
Sbjct: 402 GANVKELIRNTHCVNNNQ 419


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 614  SFLSTRSPLLSTCQRIWEDAGC 549
            +FLS  S  L     +W D GC
Sbjct: 1506 TFLSPNSTTLVLRLHVWPDNGC 1527


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 614  SFLSTRSPLLSTCQRIWEDAGC 549
            +FLS  S  L     +W D GC
Sbjct: 1502 TFLSPNSTTLVLRLHVWPDNGC 1523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,949
Number of Sequences: 438
Number of extensions: 4782
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)