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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00728
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...   109   3e-25
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    72   9e-14
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    70   4e-13
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    69   6e-13
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    64   1e-11
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    60   3e-10
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    56   6e-09
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    53   3e-08
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    44   2e-05
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    43   4e-05
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    42   6e-05
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    32   0.091
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    31   0.12 
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    29   0.64 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.85 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    28   1.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   3.4  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   6.0  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   6.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.9  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   7.9  

>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score =  109 bits (263), Expect = 3e-25
 Identities = 50/64 (78%), Positives = 54/64 (84%)
 Frame = +1

Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
           P KIDP+VTMMQVEEKPDVTY DVGGCKEQIE+LREVVE PLL PE+FVKLGI+PPK   
Sbjct: 158 PPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIM 217

Query: 685 FSAP 696
              P
Sbjct: 218 LYGP 221



 Score =   99 bits (238), Expect = 3e-22
 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
 Frame = +2

Query: 296 KQTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSVAPTDIEEGMRVG 469
           +Q +  EQPLQVARCTKII  + +  K  Y+IN+KQ AKFVV L + V+PTDIEEGMRVG
Sbjct: 86  RQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVG 145

Query: 470 VDRNKYQIHIPLPRK 514
            DRNKY I +PLP K
Sbjct: 146 CDRNKYAIQLPLPPK 160



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = +3

Query: 120 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDQG 260
           LDEGDI LLKSY  G Y + +  ++E  + V+KR+N+  GIKESD G
Sbjct: 27  LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTG 73


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +1

Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
           P+K+DP V++M VE+ PD TY  VGG ++QI++++EV+E P+ HPE F  LGI  PK   
Sbjct: 124 PNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGIL 183

Query: 685 FSAP 696
              P
Sbjct: 184 LYGP 187



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
           K ++ V    K+VVD+   +   +I+  +RV +  + YQ+   LP K
Sbjct: 80  KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNK 126


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 29/64 (45%), Positives = 44/64 (68%)
 Frame = +1

Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
           P ++DP V  M +E+  D++++ VGG  EQI +LREV+E PL +PE F+++GI+PPK   
Sbjct: 111 PREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVL 170

Query: 685 FSAP 696
              P
Sbjct: 171 LYGP 174



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
           ++I+      ++VV  +++V  + + +G+RV +D     I   LPR+
Sbjct: 67  RFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPRE 113



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 657 GYRAPEGVLLFGPP 698
           G + P+GVLL+GPP
Sbjct: 162 GIKPPKGVLLYGPP 175


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 30/64 (46%), Positives = 41/64 (64%)
 Frame = +1

Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
           PS+ D  V  M+V+EKP   YSD+GG  +QIE+L E +  P+   +KF KLG++PPK C 
Sbjct: 164 PSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCL 223

Query: 685 FSAP 696
              P
Sbjct: 224 MFGP 227



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 642 EIREAGYRAPEGVLLFGPP 698
           + R+ G + P+G L+FGPP
Sbjct: 210 KFRKLGVKPPKGCLMFGPP 228


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 23/53 (43%), Positives = 41/53 (77%)
 Frame = +1

Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
           DP + +M++++ P  +Y+D+GG + QI++++E VE PL HPE + ++GI+PPK
Sbjct: 174 DPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPK 226


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 24/64 (37%), Positives = 43/64 (67%)
 Frame = +1

Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
           P + D +++M++ +E+PDV+Y+DVGG   Q +++RE VE PL   + + ++GI+PP+   
Sbjct: 113 PPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVL 172

Query: 685 FSAP 696
              P
Sbjct: 173 LYGP 176



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 609 RSC*DTTVASGEI-REAGYRAPEGVLLFGPP 698
           R   +  +  G++ R+ G   P GVLL+GPP
Sbjct: 147 REAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 21/47 (44%), Positives = 32/47 (68%)
 Frame = +1

Query: 556 DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           +V Y D+GGC+ Q+ ++RE+VE PL HP+ F  +GI+PP+      P
Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGP 266



 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 22/60 (36%), Positives = 36/60 (60%)
 Frame = +1

Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           +P+     V E P+V + D+GG +E   +LRE V+ P+++ EKF++ G+ P K   F  P
Sbjct: 480 NPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 24/50 (48%), Positives = 32/50 (64%)
 Frame = +1

Query: 547 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           E P+V +SD+GG +E  +KL+E VE PL H E F +LG+ PPK      P
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGP 590



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           VT+S +GG + QI ++R++VE P  +PE F    I PP+      P
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGP 321



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 657 GYRAPEGVLLFGPP 698
           G R P+GVLL+GPP
Sbjct: 578 GVRPPKGVLLYGPP 591


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +1

Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           E   D++ SD+GG  + I +L E+V  P+ HPE +   GI PP+      P
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGP 216



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 648 REAGYRAPEGVLLFGPP 698
           +  G  AP GVLL+GPP
Sbjct: 519 QSVGISAPTGVLLWGPP 535


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 18/49 (36%), Positives = 32/49 (65%)
 Frame = +1

Query: 550 KPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           + ++ ++ +GG ++ I +L+E+V  PLL+PE F+ L I PP+   F  P
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGP 414


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           +++  VGG    I +L+E+V  PLL+PE F +  ++PP+   F  P
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGP 308


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 556 DVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648
           DV++ D+GG  E + +L + V  PL +PE F
Sbjct: 85  DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 523 TVTMMQVEEKP-DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
           T     +EE+  +V +SDV G  E  E+L E+V+  L  P  F +LG + P+    + P
Sbjct: 251 TTEQEPMEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGP 308


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -1

Query: 677 SFGGSIPSFTNFSGCNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGS 516
           SFG  + + T++S  ++   +TS+S S+ S+H  TS   +S  SS+      GS
Sbjct: 492 SFGNFLGTATSYSSASASYPSTSMSASLSSVH--TSSATSSSKSSSSSSSRSGS 543


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -1

Query: 698 GGAEKQHSFGGSIPSFTNFSGCNSGVS---TTSLSFSIC-SLHPPTSLYVTSGFSST 540
           G +    S  GS   FTN +  N  VS   TT  S  +  S   PTS + +SGF++T
Sbjct: 572 GNSTITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTT 628



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = -1

Query: 656 SFTNFSGCN--SGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 540
           +FT+ SG N  SG+ T+S S  +  S   PTS + +SGF++T
Sbjct: 619 TFTS-SGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 659



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = -1

Query: 656 SFTNFSGCN--SGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 540
           +FT+ SG N  SG+ T+S S  +  S   PTS + +SGF++T
Sbjct: 681 TFTS-SGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 721


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 487 PDPHTAPSKIDPTVTMMQVEEKPDVTY-SDVGGCKEQIEKLREVVETPLLHPEKF 648
           P   T PS       M ++    +  Y SD+ G  +    L+E V  P L PE F
Sbjct: 351 PLQQTTPSSDFEYAIMNEIISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELF 405


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 632 NSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGSIFEGAVCGSGIYYDP 471
           N  V    +S +I     PTS Y+ S +S+     ++ SIF+    G G Y+ P
Sbjct: 489 NVEVDIPEISLNISDSKIPTSAYMPSYYSAVIFPSSISSIFQKYNYG-GKYWCP 541


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 499 TAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFV 651
           T+PS IDP   +  +        +D+G  ++  + L+ V+ET   H   +V
Sbjct: 232 TSPSTIDPKGYLTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKHASGWV 282


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 484 IPDPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648
           +PD  TA S        +   ++PDV Y D G  K  I  + + V  P   P  F
Sbjct: 190 LPDSVTADSPALCVFLPLNFPDRPDVVYMDGGNLKSTI--VCQCVSCPFQIPGHF 242


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 520 PTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLG 660
           P+++ +  + + +V+ +      E IEKLR+ ++T      KF+ LG
Sbjct: 132 PSLSALATQAQRNVSKTLPQSTNETIEKLRQFLQTRYQPATKFLDLG 178


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 677 SFGGSIPSFTNFSGCNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCI-MVTV 522
           S   S+P  ++ S  +S  S++S S S  S    +S ++T+  SST I  VTV
Sbjct: 203 SSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTV 255


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 566 YVTSGFSSTCIMVTVGSIFEGAVCGSGIYYD 474
           Y+TS  + TC++V+  S F   VC   I+Y+
Sbjct: 604 YLTSQKNITCLIVSHDSSFLDHVCTDIIHYE 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,376
Number of Sequences: 5004
Number of extensions: 52934
Number of successful extensions: 229
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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