BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00728 (698 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 109 3e-25 SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 72 9e-14 SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 70 4e-13 SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 69 6e-13 SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 64 1e-11 SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 60 3e-10 SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 56 6e-09 SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 53 3e-08 SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 44 2e-05 SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 43 4e-05 SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 42 6e-05 SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 32 0.091 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 31 0.12 SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 29 0.64 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.85 SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 1.5 SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.4 SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 3.4 SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 6.0 SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 6.0 SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.9 SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 7.9 >SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 109 bits (263), Expect = 3e-25 Identities = 50/64 (78%), Positives = 54/64 (84%) Frame = +1 Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684 P KIDP+VTMMQVEEKPDVTY DVGGCKEQIE+LREVVE PLL PE+FVKLGI+PPK Sbjct: 158 PPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIM 217 Query: 685 FSAP 696 P Sbjct: 218 LYGP 221 Score = 99 bits (238), Expect = 3e-22 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 2/75 (2%) Frame = +2 Query: 296 KQTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSVAPTDIEEGMRVG 469 +Q + EQPLQVARCTKII + + K Y+IN+KQ AKFVV L + V+PTDIEEGMRVG Sbjct: 86 RQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVG 145 Query: 470 VDRNKYQIHIPLPRK 514 DRNKY I +PLP K Sbjct: 146 CDRNKYAIQLPLPPK 160 Score = 58.0 bits (134), Expect = 1e-09 Identities = 25/47 (53%), Positives = 33/47 (70%) Frame = +3 Query: 120 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDQG 260 LDEGDI LLKSY G Y + + ++E + V+KR+N+ GIKESD G Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTG 73 >SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|Schizosaccharomyces pombe|chr 2|||Manual Length = 403 Score = 71.7 bits (168), Expect = 9e-14 Identities = 31/64 (48%), Positives = 44/64 (68%) Frame = +1 Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684 P+K+DP V++M VE+ PD TY VGG ++QI++++EV+E P+ HPE F LGI PK Sbjct: 124 PNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGIL 183 Query: 685 FSAP 696 P Sbjct: 184 LYGP 187 Score = 30.3 bits (65), Expect = 0.28 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +2 Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514 K ++ V K+VVD+ + +I+ +RV + + YQ+ LP K Sbjct: 80 KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNK 126 >SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizosaccharomyces pombe|chr 3|||Manual Length = 388 Score = 69.7 bits (163), Expect = 4e-13 Identities = 29/64 (45%), Positives = 44/64 (68%) Frame = +1 Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684 P ++DP V M +E+ D++++ VGG EQI +LREV+E PL +PE F+++GI+PPK Sbjct: 111 PREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVL 170 Query: 685 FSAP 696 P Sbjct: 171 LYGP 174 Score = 27.1 bits (57), Expect = 2.6 Identities = 12/47 (25%), Positives = 26/47 (55%) Frame = +2 Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514 ++I+ ++VV +++V + + +G+RV +D I LPR+ Sbjct: 67 RFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPRE 113 Score = 26.2 bits (55), Expect = 4.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 657 GYRAPEGVLLFGPP 698 G + P+GVLL+GPP Sbjct: 162 GIKPPKGVLLYGPP 175 >SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit Rpt5|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 68.9 bits (161), Expect = 6e-13 Identities = 30/64 (46%), Positives = 41/64 (64%) Frame = +1 Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684 PS+ D V M+V+EKP YSD+GG +QIE+L E + P+ +KF KLG++PPK C Sbjct: 164 PSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCL 223 Query: 685 FSAP 696 P Sbjct: 224 MFGP 227 Score = 27.1 bits (57), Expect = 2.6 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +3 Query: 642 EIREAGYRAPEGVLLFGPP 698 + R+ G + P+G L+FGPP Sbjct: 210 KFRKLGVKPPKGCLMFGPP 228 >SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 64.5 bits (150), Expect = 1e-11 Identities = 23/53 (43%), Positives = 41/53 (77%) Frame = +1 Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675 DP + +M++++ P +Y+D+GG + QI++++E VE PL HPE + ++GI+PPK Sbjct: 174 DPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPK 226 >SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizosaccharomyces pombe|chr 3|||Manual Length = 389 Score = 60.1 bits (139), Expect = 3e-10 Identities = 24/64 (37%), Positives = 43/64 (67%) Frame = +1 Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684 P + D +++M++ +E+PDV+Y+DVGG Q +++RE VE PL + + ++GI+PP+ Sbjct: 113 PPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVL 172 Query: 685 FSAP 696 P Sbjct: 173 LYGP 176 Score = 27.1 bits (57), Expect = 2.6 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +3 Query: 609 RSC*DTTVASGEI-REAGYRAPEGVLLFGPP 698 R + + G++ R+ G P GVLL+GPP Sbjct: 147 REAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177 >SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosaccharomyces pombe|chr 1|||Manual Length = 815 Score = 55.6 bits (128), Expect = 6e-09 Identities = 21/47 (44%), Positives = 32/47 (68%) Frame = +1 Query: 556 DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 +V Y D+GGC+ Q+ ++RE+VE PL HP+ F +GI+PP+ P Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGP 266 Score = 52.0 bits (119), Expect = 8e-08 Identities = 22/60 (36%), Positives = 36/60 (60%) Frame = +1 Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 +P+ V E P+V + D+GG +E +LRE V+ P+++ EKF++ G+ P K F P Sbjct: 480 NPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539 >SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 809 Score = 53.2 bits (122), Expect = 3e-08 Identities = 24/50 (48%), Positives = 32/50 (64%) Frame = +1 Query: 547 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 E P+V +SD+GG +E +KL+E VE PL H E F +LG+ PPK P Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGP 590 Score = 42.3 bits (95), Expect = 6e-05 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = +1 Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 VT+S +GG + QI ++R++VE P +PE F I PP+ P Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGP 321 Score = 27.5 bits (58), Expect = 2.0 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +3 Query: 657 GYRAPEGVLLFGPP 698 G R P+GVLL+GPP Sbjct: 578 GVRPPKGVLLYGPP 591 >SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 779 Score = 44.0 bits (99), Expect = 2e-05 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +1 Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 E D++ SD+GG + I +L E+V P+ HPE + GI PP+ P Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGP 216 Score = 25.8 bits (54), Expect = 6.0 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 648 REAGYRAPEGVLLFGPP 698 + G AP GVLL+GPP Sbjct: 519 QSVGISAPTGVLLWGPP 535 >SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1201 Score = 43.2 bits (97), Expect = 4e-05 Identities = 18/49 (36%), Positives = 32/49 (65%) Frame = +1 Query: 550 KPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 + ++ ++ +GG ++ I +L+E+V PLL+PE F+ L I PP+ F P Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGP 414 >SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1190 Score = 42.3 bits (95), Expect = 6e-05 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = +1 Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 +++ VGG I +L+E+V PLL+PE F + ++PP+ F P Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGP 308 >SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 355 Score = 31.9 bits (69), Expect = 0.091 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +1 Query: 556 DVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648 DV++ D+GG E + +L + V PL +PE F Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 31.5 bits (68), Expect = 0.12 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +1 Query: 523 TVTMMQVEEKP-DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696 T +EE+ +V +SDV G E E+L E+V+ L P F +LG + P+ + P Sbjct: 251 TTEQEPMEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGP 308 >SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr 3|||Manual Length = 625 Score = 29.1 bits (62), Expect = 0.64 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = -1 Query: 677 SFGGSIPSFTNFSGCNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGS 516 SFG + + T++S ++ +TS+S S+ S+H TS +S SS+ GS Sbjct: 492 SFGNFLGTATSYSSASASYPSTSMSASLSSVH--TSSATSSSKSSSSSSSRSGS 543 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 28.7 bits (61), Expect = 0.85 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = -1 Query: 698 GGAEKQHSFGGSIPSFTNFSGCNSGVS---TTSLSFSIC-SLHPPTSLYVTSGFSST 540 G + S GS FTN + N VS TT S + S PTS + +SGF++T Sbjct: 572 GNSTITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTT 628 Score = 25.8 bits (54), Expect = 6.0 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%) Frame = -1 Query: 656 SFTNFSGCN--SGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 540 +FT+ SG N SG+ T+S S + S PTS + +SGF++T Sbjct: 619 TFTS-SGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 659 Score = 25.8 bits (54), Expect = 6.0 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%) Frame = -1 Query: 656 SFTNFSGCN--SGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 540 +FT+ SG N SG+ T+S S + S PTS + +SGF++T Sbjct: 681 TFTS-SGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 721 >SPBC947.01 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 660 Score = 27.9 bits (59), Expect = 1.5 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +1 Query: 487 PDPHTAPSKIDPTVTMMQVEEKPDVTY-SDVGGCKEQIEKLREVVETPLLHPEKF 648 P T PS M ++ + Y SD+ G + L+E V P L PE F Sbjct: 351 PLQQTTPSSDFEYAIMNEIISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELF 405 >SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9|Schizosaccharomyces pombe|chr 1|||Manual Length = 1223 Score = 26.6 bits (56), Expect = 3.4 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = -1 Query: 632 NSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGSIFEGAVCGSGIYYDP 471 N V +S +I PTS Y+ S +S+ ++ SIF+ G G Y+ P Sbjct: 489 NVEVDIPEISLNISDSKIPTSAYMPSYYSAVIFPSSISSIFQKYNYG-GKYWCP 541 >SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 906 Score = 26.6 bits (56), Expect = 3.4 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = +1 Query: 499 TAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFV 651 T+PS IDP + + +D+G ++ + L+ V+ET H +V Sbjct: 232 TSPSTIDPKGYLTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKHASGWV 282 >SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 937 Score = 25.8 bits (54), Expect = 6.0 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +1 Query: 484 IPDPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648 +PD TA S + ++PDV Y D G K I + + V P P F Sbjct: 190 LPDSVTADSPALCVFLPLNFPDRPDVVYMDGGNLKSTI--VCQCVSCPFQIPGHF 242 >SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces pombe|chr 2|||Manual Length = 596 Score = 25.8 bits (54), Expect = 6.0 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +1 Query: 520 PTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLG 660 P+++ + + + +V+ + E IEKLR+ ++T KF+ LG Sbjct: 132 PSLSALATQAQRNVSKTLPQSTNETIEKLRQFLQTRYQPATKFLDLG 178 >SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 374 Score = 25.4 bits (53), Expect = 7.9 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -1 Query: 677 SFGGSIPSFTNFSGCNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCI-MVTV 522 S S+P ++ S +S S++S S S S +S ++T+ SST I VTV Sbjct: 203 SSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTV 255 >SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1057 Score = 25.4 bits (53), Expect = 7.9 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -1 Query: 566 YVTSGFSSTCIMVTVGSIFEGAVCGSGIYYD 474 Y+TS + TC++V+ S F VC I+Y+ Sbjct: 604 YLTSQKNITCLIVSHDSSFLDHVCTDIIHYE 634 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,663,376 Number of Sequences: 5004 Number of extensions: 52934 Number of successful extensions: 229 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 228 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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