Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00728
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 135 2e-32
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 75 5e-14
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 75 5e-14
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 71 8e-13
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 71 8e-13
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 71 1e-12
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 69 4e-12
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 69 4e-12
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 64 9e-11
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 61 6e-10
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 56 3e-08
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 45 5e-05
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 45 5e-05
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 45 5e-05
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 45 5e-05
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 45 5e-05
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 35 0.064
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 35 0.064
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 30 1.8
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 30 1.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.4
Z73969-8|CAA98239.1| 351|Caenorhabditis elegans Hypothetical pr... 29 3.2
U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine rece... 29 4.2
AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical ... 28 7.4
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine re... 27 9.8
AF016445-2|AAC69064.1| 376|Caenorhabditis elegans Serpentine re... 27 9.8
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 27 9.8
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 135 bits (327), Expect = 2e-32
Identities = 61/73 (83%), Positives = 67/73 (91%)
Frame = +2
Query: 296 KQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVD 475
KQ +Q EQPLQVARCTKII +D +DP+Y+INVKQFAKFVVDL DSVAPTDIEEGMRVGVD
Sbjct: 86 KQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVD 145
Query: 476 RNKYQIHIPLPRK 514
RNKYQIH+PLP K
Sbjct: 146 RNKYQIHLPLPAK 158
Score = 118 bits (283), Expect = 5e-27
Identities = 53/64 (82%), Positives = 57/64 (89%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P+KIDPTVTMMQVEEKPDVTYSDVGGCK+QIEKLREVVETPLLHPE++V LGIEPPK
Sbjct: 156 PAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVL 215
Query: 685 FSAP 696
P
Sbjct: 216 LYGP 219
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 45 MPDHLGNDMRXXXXXXXXXXXXXX-SLDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKR 221
MPDHLG+DMR +LDEGDIA+LK YGQG Y + +K ++ I+ +K+
Sbjct: 1 MPDHLGDDMRKTKKDDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKK 60
Query: 222 VNELTGIKESDQG 260
VNEL+G+KESD G
Sbjct: 61 VNELSGVKESDTG 73
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 74.9 bits (176), Expect = 5e-14
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P ++DP V M E+ +++YSDVGG EQI +LREVVE PL++PE F ++GI PPK C
Sbjct: 121 PREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCL 180
Query: 685 FSAP 696
P
Sbjct: 181 LFGP 184
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 74.9 bits (176), Expect = 5e-14
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P ++DP V M E+ +++YSDVGG EQI +LREVVE PL++PE F ++GI PPK C
Sbjct: 129 PREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCL 188
Query: 685 FSAP 696
P
Sbjct: 189 LFGP 192
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 70.9 bits (166), Expect = 8e-13
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
PSK+DP V++M VE+ PD TY VGG QI++++EV+E P+ HPE F LGI PK
Sbjct: 133 PSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVL 192
Query: 685 FSAP 696
P
Sbjct: 193 LYGP 196
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 70.9 bits (166), Expect = 8e-13
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
PSK+DP V++M VE+ PD TY VGG QI++++EV+E P+ HPE F LGI PK
Sbjct: 154 PSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVL 213
Query: 685 FSAP 696
P
Sbjct: 214 LYGP 217
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/64 (48%), Positives = 43/64 (67%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P+K+DP V++M VE+ PD TY VGG +QI++++EV+E P+ HPE F LGI PK
Sbjct: 138 PNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVL 197
Query: 685 FSAP 696
P
Sbjct: 198 LFGP 201
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
K ++ V K+VVD+ S+ + G RV + + Y +H LP K
Sbjct: 94 KVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNK 140
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P++ D V M+V+E+P YSD+GGC +QI++L E V P+ H ++FV LGI PPK
Sbjct: 156 PAEYDSRVKAMEVDERPTEQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVL 215
Query: 685 FSAP 696
P
Sbjct: 216 MYGP 219
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/53 (50%), Positives = 41/53 (77%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
DP V++M++E+ P TY+DVGG +QI++++E VE PL HPE + ++GI PPK
Sbjct: 171 DPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPK 223
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 64.1 bits (149), Expect = 9e-11
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P + D ++ M++ +EKPD++Y D+GG Q +++RE VE PL H E + ++GI+PP+
Sbjct: 140 PPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVL 199
Query: 685 FSAP 696
P
Sbjct: 200 MYGP 203
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
KID +VE+ P T+ D+GGC+ QI++L+E VE PL HPE + ++GI PK
Sbjct: 164 KIDSNAMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPEYYEEMGITAPK 218
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 502 APSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKEC 681
A K P+ V E P+ T+SD+GG + +L+E+V+ P+ HPEK++K G++P +
Sbjct: 461 AQGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGV 520
Query: 682 CFSAP 696
F P
Sbjct: 521 LFYGP 525
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
DP + E D+ Y D+GG ++Q+ +++E+VE PL HP+ F +GI+PP+ P
Sbjct: 193 DPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGP 252
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 502 APSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKEC 681
A K P+ V E P+ T+SD+GG + +L+E+V+ P+ HPEK++K G++P +
Sbjct: 460 AMGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGV 519
Query: 682 CFSAP 696
F P
Sbjct: 520 LFYGP 524
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
DP + E +V Y D+GG ++Q+ +++E+VE PL HP+ F +G++PP+ P
Sbjct: 192 DPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGP 251
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 502 APSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKEC 681
A K P+ V E P+ T+SD+GG + +L+E+V+ P+ HPEK++K G++P +
Sbjct: 460 AMGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGV 519
Query: 682 CFSAP 696
F P
Sbjct: 520 LFYGP 524
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
DP + E +V Y D+GG ++Q+ +++E+VE PL HP+ F +G++PP+ P
Sbjct: 192 DPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGP 251
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +1
Query: 502 APSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPP 672
A +I PT + E P+V+++D+GG +E ++++ V P HPE F + GI+PP
Sbjct: 437 ARKRIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPP 493
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D S IDP M V+ V + VGG I+ L+EVV P+L+PE F K I P
Sbjct: 371 DAGQGASDIDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINP 424
Query: 670 PKECCFSAP 696
PK F P
Sbjct: 425 PKGVVFYGP 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 170 HKNHQGSRRRNSDSNEE 220
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D S IDP M V+ V + VGG I+ L+EVV P+L+PE F K I P
Sbjct: 369 DAGQGASDIDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINP 422
Query: 670 PKECCFSAP 696
PK F P
Sbjct: 423 PKGVVFYGP 431
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 170 HKNHQGSRRRNSDSNEE 220
H+N GSRRR SDS+ +
Sbjct: 299 HRNRNGSRRRRSDSDSD 315
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D S IDP M V+ V + VGG I+ L+EVV P+L+PE F K I P
Sbjct: 371 DAGQGASDIDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINP 424
Query: 670 PKECCFSAP 696
PK F P
Sbjct: 425 PKGVVFYGP 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 170 HKNHQGSRRRNSDSNEE 220
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D S IDP M V+ V + VGG I+ L+EVV P+L+PE F K I P
Sbjct: 371 DAGQGASDIDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINP 424
Query: 670 PKECCFSAP 696
PK F P
Sbjct: 425 PKGVVFYGP 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 170 HKNHQGSRRRNSDSNEE 220
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D S IDP M V+ V + VGG I+ L+EVV P+L+PE F K I P
Sbjct: 369 DAGQGASDIDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINP 422
Query: 670 PKECCFSAP 696
PK F P
Sbjct: 423 PKGVVFYGP 431
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 170 HKNHQGSRRRNSDSNEE 220
H+N GSRRR SDS+ +
Sbjct: 299 HRNRNGSRRRRSDSDSD 315
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D S IDP M V+ V + VGG I+ L+EVV P+L+PE F K I P
Sbjct: 371 DAGQGASDIDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINP 424
Query: 670 PKECCFSAP 696
PK F P
Sbjct: 425 PKGVVFYGP 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 170 HKNHQGSRRRNSDSNEE 220
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D S IDP M V+ V + VGG I+ L+EVV P+L+PE F K I P
Sbjct: 371 DAGQGASDIDP----MSVDSS--VGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINP 424
Query: 670 PKECCFSAP 696
PK F P
Sbjct: 425 PKGVVFYGP 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 170 HKNHQGSRRRNSDSNEE 220
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
+ + DV GC E ++RE V+ L +P +F KLG + P+ + P
Sbjct: 282 IKFKDVAGCSEAKVEIREFVDY-LKNPGRFTKLGAKLPRGALLTGP 326
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
+ + DV GC E ++RE V+ L +P +F KLG + P+ + P
Sbjct: 282 IKFKDVAGCSEAKVEIREFVDY-LKNPGRFTKLGAKLPRGALLTGP 326
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIE 666
D A S I P PDV++ D+G E ++L + P+ + F LGI+
Sbjct: 507 DFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFAALGID 565
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIE 666
D A S I P PDV++ D+G E ++L + P+ + F LGI+
Sbjct: 507 DFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFAALGID 565
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTV---TMMQVEEKPDVTYSDVGG-----CKEQIEKLREVVETPLLHP 639
+P P T+ ++PTV T ++ +EK +V +++ C+E+I++L VE L
Sbjct: 4664 VPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEEIKELLTEVEVELFFS 4723
Query: 640 EKFVKLGIE 666
+ V G+E
Sbjct: 4724 QAEVFSGLE 4732
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTVTMM---QVEEKPDVTYSDV-----GGCKEQIEKLREVVETPLLHP 639
+P P T+ ++PTV + + +E P+V +++ C+E+I++L VE L
Sbjct: 5181 VPVPETSAPTVEPTVEKLAPVESKETPEVQPAEILEQKDVTCEEEIKELLTEVEVELFFS 5240
Query: 640 EKFVKLGIE 666
+ V G+E
Sbjct: 5241 KAEVFSGLE 5249
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTV---TMMQVEEKPDVTYSDVGG-----CKEQIEKLREVVETPLLHP 639
+P P T+ ++PTV T ++ +EK +V +++ C+E+I++L VE L
Sbjct: 4664 VPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEEIKELLTEVEVELFFS 4723
Query: 640 EKFVKLGIE 666
+ V G+E
Sbjct: 4724 QAEVFSGLE 4732
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTVTMM---------QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLH 636
+P P T+ ++PTV + +VE V DV C+E+I++L VE LL
Sbjct: 5342 VPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVT-CEEEIKELLTEVEVELLF 5400
Query: 637 PEKFVKLGIE 666
+ V G+E
Sbjct: 5401 SQAEVFSGLE 5410
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTVTMM---QVEEKPDVTYSDV-----GGCKEQIEKLREVVETPLLHP 639
+P P T+ ++PTV + + +E P+V +++ C+E+I++L VE L
Sbjct: 5181 VPVPETSAPTVEPTVEKLAPVESKETPEVQPAEILEQKDVTCEEEIKELLTEVEVELFFS 5240
Query: 640 EKFVKLGIE 666
+ V G+E
Sbjct: 5241 KAEVFSGLE 5249
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTV---TMMQVEEKPDVTYSDVGG-----CKEQIEKLREVVETPLLHP 639
+P P T+ ++PTV T ++ +EK +V +++ C+E+I++L VE L
Sbjct: 4664 VPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEEIKELLTEVEVELFFS 4723
Query: 640 EKFVKLGIE 666
+ V G+E
Sbjct: 4724 QAEVFSGLE 4732
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTVTMM---------QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLH 636
+P P T+ ++PTV + +VE V DV C+E+I++L VE LL
Sbjct: 5342 VPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVT-CEEEIKELLTEVEVELLF 5400
Query: 637 PEKFVKLGIE 666
+ V G+E
Sbjct: 5401 SQAEVFSGLE 5410
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Frame = +1
Query: 484 IPDPHTAPSKIDPTVTMM---QVEEKPDVTYSDV-----GGCKEQIEKLREVVETPLLHP 639
+P P T+ ++PTV + + +E P+V +++ C+E+I++L VE L
Sbjct: 5181 VPVPETSAPTVEPTVEKLAPVESKETPEVQPAEILEQKDVTCEEEIKELLTEVEVELFFS 5240
Query: 640 EKFVKLGIE 666
+ V G+E
Sbjct: 5241 KAEVFSGLE 5249
>Z73969-8|CAA98239.1| 351|Caenorhabditis elegans Hypothetical
protein C12D8.12 protein.
Length = 351
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 573 VTVCYIRFLLNLHHGDSWIYFRGSGMWIWYLL 478
++V ++ L +G WIYF G + W+L+
Sbjct: 102 ISVHFVYRYKALKYGSKWIYFHGKYTFAWFLI 133
>U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein275 protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 423 CKSTTNFANCFTLIIYFGSFESALMIFVHRATCRGC--SFCS 304
C+S N CF +I G F + +M+++H C FCS
Sbjct: 268 CQSANNL--CFIIIAAHGLFSTFIMLYIHSPYREACFRIFCS 307
>AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical
protein T15B7.13 protein.
Length = 354
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 224 NPLHYCLNSFFYFLDDFCVLSLAV*LQKRNI 132
NPLH FF LD FC +S V L ++ +
Sbjct: 68 NPLHIYFLVFFTVLDFFCNISFIVVLSQKEL 98
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 620 STTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPSCLL 450
S+T +SF+I L PP F ++ + G C S I+ P+ LL
Sbjct: 501 SSTPISFNIHHLPPPVGFTYRCQFGTSTSSIKANWTTTGVSCPSEIFTSPNTFEILL 557
>Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical
protein M199.4 protein.
Length = 233
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -3
Query: 510 RGSGMWIWYLLRST-PTLMP-SSISVGAT--ESCKSTTNFANC 394
+G + ++ LL++ P + P S + +GA E+C S +NF NC
Sbjct: 120 KGEFISVFALLKNRFPNIKPVSQVMIGARRLETCASISNFGNC 162
>AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine
receptor, class w protein143 protein.
Length = 365
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -1
Query: 584 HPPTSLYVTSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPSC 456
HPPTSL F+ CI + G I GS I H SC
Sbjct: 156 HPPTSL-----FTMICINLIFGPISIATFFGSDITSQNHTSSC 193
>AF016445-2|AAC69064.1| 376|Caenorhabditis elegans Serpentine
receptor, class w protein134 protein.
Length = 376
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 581 PPTSLYVTSGFSSTCIMVTVGSIFEGAV 498
P T+L V G S+ CI+ ++ ++FE V
Sbjct: 157 PSTALRVIFGVSAICIIFSISTVFENDV 184
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 620 STTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPSCLL 450
S+T +SF+I L PP F ++ + G C S I+ P+ LL
Sbjct: 503 SSTPISFNIHHLPPPVGFTYRCQFGTSTSSIKANWTTTGVSCPSEIFTSPNTFEILL 559
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,610
Number of Sequences: 27780
Number of extensions: 308439
Number of successful extensions: 1160
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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