Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00728
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 120 1e-27
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 111 4e-25
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 73 2e-13
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 73 2e-13
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 68 5e-12
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 68 5e-12
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 67 9e-12
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 67 1e-11
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 67 1e-11
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 64 6e-11
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 64 6e-11
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 57 1e-08
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 57 1e-08
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 54 9e-08
At1g53790.1 68414.m06122 F-box family protein contains Pfam PF00... 54 9e-08
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 52 4e-07
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 47 1e-05
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 46 2e-05
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 46 2e-05
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 42 3e-04
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 40 0.002
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 38 0.006
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 37 0.011
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 37 0.011
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 36 0.020
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 36 0.026
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 35 0.045
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 35 0.060
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 34 0.079
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 33 0.18
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 33 0.24
At5g13580.1 68418.m01570 ABC transporter family protein 31 0.73
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 31 0.73
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 31 0.73
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 31 0.73
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 31 0.97
At2g19780.1 68415.m02311 leucine-rich repeat family protein / ex... 30 1.7
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 30 1.7
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr... 29 2.2
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 29 2.2
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 29 3.0
At3g55090.1 68416.m06118 ABC transporter family protein ATP-bind... 29 3.0
At2g39350.1 68415.m04830 ABC transporter family protein 29 3.9
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa... 28 5.2
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind... 28 5.2
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 28 5.2
At3g55130.1 68416.m06122 ABC transporter family protein breast c... 28 6.8
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 120 bits (288), Expect = 1e-27
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = +2
Query: 296 KQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVD 475
KQ +Q EQPLQVARCTKII+ ++ D KY+INVKQ AKFVV L D V+PTDIEEGMRVGVD
Sbjct: 77 KQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVD 136
Query: 476 RNKYQIHIPLPRK 514
RNKYQI IPLP K
Sbjct: 137 RNKYQIQIPLPPK 149
Score = 113 bits (272), Expect = 1e-25
Identities = 51/65 (78%), Positives = 57/65 (87%), Gaps = 1/65 (1%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK-EC 681
P KIDP+VTMM VEEKPDVTY+DVGGCKEQIEK+REVVE P+LHPEKFVKLGI+PPK
Sbjct: 147 PPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVL 206
Query: 682 CFSAP 696
C+ P
Sbjct: 207 CYGPP 211
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +3
Query: 120 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDQG 260
LDE DIALLK+YG G Y+ IK+VE+ I+ + K++N+L GIKESD G
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTG 64
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 111 bits (267), Expect = 4e-25
Identities = 49/65 (75%), Positives = 56/65 (86%), Gaps = 1/65 (1%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK-EC 681
P KIDP+VTMM VEEKPD TYSD+GGCKEQIEK+REVVE P+LHPEKFV+LGI+PPK
Sbjct: 184 PPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVL 243
Query: 682 CFSAP 696
C+ P
Sbjct: 244 CYGPP 248
Score = 97.9 bits (233), Expect = 6e-21
Identities = 43/73 (58%), Positives = 56/73 (76%)
Frame = +2
Query: 296 KQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVD 475
KQ +Q EQPL VA CT+II+ ++ D KY++++K+ K+VV L D +PTDIE GMRVGVD
Sbjct: 114 KQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVD 173
Query: 476 RNKYQIHIPLPRK 514
+ KYQI IPLP K
Sbjct: 174 QKKYQIQIPLPPK 186
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/64 (48%), Positives = 43/64 (67%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
PSK+DP V +M+VE+ PD TY +GG +QI++++EV+E P+ HPE F LGI PK
Sbjct: 140 PSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVL 199
Query: 685 FSAP 696
P
Sbjct: 200 LYGP 203
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
K ++ V K+VVD+ S+ T + RV + + Y +H+ LP K
Sbjct: 96 KVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSK 142
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/64 (48%), Positives = 43/64 (67%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
PSK+DP V +M+VE+ PD TY +GG +QI++++EV+E P+ HPE F LGI PK
Sbjct: 140 PSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVL 199
Query: 685 FSAP 696
P
Sbjct: 200 LYGP 203
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
K ++ V K+VVD+ S+ T I RV + + Y +H+ LP K
Sbjct: 96 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSK 142
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +1
Query: 499 TAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKE 678
T PS+ D V M+V+EKP Y+D+GG ++QI++L E + P+ H E+F KLG+ PPK
Sbjct: 148 TLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKG 207
Query: 679 CCFSAP 696
P
Sbjct: 208 VLLYGP 213
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 657 GYRAPEGVLLFGPP 698
G R P+GVLL+GPP
Sbjct: 201 GVRPPKGVLLYGPP 214
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +1
Query: 499 TAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKE 678
T PS+ D V M+V+EKP Y+D+GG ++QI++L E + P+ H E+F KLGI PPK
Sbjct: 147 TLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKG 206
Query: 679 CCFSAP 696
P
Sbjct: 207 VLLYGP 212
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 642 EIREAGYRAPEGVLLFGPP 698
+ + G R P+GVLL+GPP
Sbjct: 195 QFEKLGIRPPKGVLLYGPP 213
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 67.3 bits (157), Expect = 9e-12
Identities = 26/64 (40%), Positives = 43/64 (67%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P + D +++++ EKPDV+Y+D+GGC Q +++RE VE PL H E + ++GI+PP+
Sbjct: 134 PPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVL 193
Query: 685 FSAP 696
P
Sbjct: 194 LYGP 197
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/55 (47%), Positives = 43/55 (78%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
++DP V++M+VE+ P +Y+D+GG + QI++++E VE PL HPE + +GI+PPK
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/55 (47%), Positives = 43/55 (78%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
++DP V++M+VE+ P +Y+D+GG + QI++++E VE PL HPE + +GI+PPK
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P ++DP V M E+ +++YS VGG +QI +LRE +E PL++PE F+++GI+PPK
Sbjct: 118 PREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVL 177
Query: 685 FSAP 696
P
Sbjct: 178 LYGP 181
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P ++DP V M E+ +++YS VGG +QI +LRE +E PL++PE F+++GI+PPK
Sbjct: 118 PREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVL 177
Query: 685 FSAP 696
P
Sbjct: 178 LYGP 181
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/67 (38%), Positives = 39/67 (58%)
Frame = +1
Query: 496 HTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
HTA +P+ V E P+V+++D+GG + +L+E V+ P+ HPEKF K G+ P K
Sbjct: 456 HTALGNSNPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK 515
Query: 676 ECCFSAP 696
F P
Sbjct: 516 GVLFYGP 522
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = +1
Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
E DV Y DVGG ++Q+ ++RE+VE PL HP+ F +G++PPK P
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGP 249
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +1
Query: 496 HTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
HTA +P+ V E P+V++ D+GG + +L+E V+ P+ HPEKF K G+ P K
Sbjct: 456 HTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK 515
Query: 676 ECCFSAP 696
F P
Sbjct: 516 GVLFYGP 522
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1
Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
E +V Y DVGG ++Q+ ++RE+VE PL HP+ F +G++PPK P
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGP 249
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1
Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
E +V Y DVGG ++Q+ ++RE+VE PL HP+ F +G++PPK P
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGP 250
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = +1
Query: 499 TAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKE 678
TA +P+ V E P+V++ D+GG + +L+E V+ P+ HPEKF K G+ P K
Sbjct: 458 TALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKG 517
Query: 679 CCFSAP 696
F P
Sbjct: 518 VLFYGP 523
>At1g53790.1 68414.m06122 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 444
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 120 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDQG 260
LDE DIAL+K+YG Y+ IK+VE+ I+ + +++N+L GIKESD G
Sbjct: 10 LDEDDIALVKTYGLVPYSAPIKKVEKEIKELTEKINDLCGIKESDTG 56
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +1
Query: 502 APSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKEC 681
A S + P++ E P VT+ DVGG K+ +KL++ VE P+ H FVK+GI P +
Sbjct: 264 AKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGI 323
Query: 682 CFSAP 696
P
Sbjct: 324 LLHGP 328
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +1
Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCF 687
SK + +Q+ E D+ + D+GG E I L+E+V PLL+PE F I PP+
Sbjct: 363 SKGGADIQPLQINE--DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLL 420
Query: 688 SAP 696
P
Sbjct: 421 CGP 423
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +1
Query: 490 DPHTAPSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEP 669
D A +KI P+ + E P V + DVGG E +L E VE P H + F ++G P
Sbjct: 698 DFENAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRP 757
Query: 670 PKECCFSAP 696
P P
Sbjct: 758 PSGILMFGP 766
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 535 MQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
++VE T+ D GG K+ +++L V P+L+PE F K+G++PP F P
Sbjct: 222 LEVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGP 275
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
+T++DV G E E+L E+VE L +PEK+V+LG PP+
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPR 359
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
+T++DV G E E+L E+VE L +P+++V+LG PP+
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPR 363
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 538 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
+V+ V ++DV G E +++L+E+V+ L +P+ F K+GI+PP P
Sbjct: 420 RVDGSTGVKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGP 471
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +1
Query: 547 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
EK T+ DV GC + ++L EVVE L +P KF +LG + PK
Sbjct: 355 EKNVKTFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPK 396
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P +I + Q+E VT+ DV G E + EVVE L PE+F +G PK
Sbjct: 199 PLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVL 257
Query: 685 FSAP 696
P
Sbjct: 258 LVGP 261
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 544 EEKPD--VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
+E P+ VT+ DV G + +L+EVV+ L +P+K+ LG + PK C P
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGP 291
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 35.9 bits (79), Expect = 0.026
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 505 PSKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECC 684
P + + Q+E VT+ DV G E + EVVE L PE+F +G + PK
Sbjct: 206 PLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVL 264
Query: 685 FSAP 696
P
Sbjct: 265 LIGP 268
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 544 EEKPD--VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
+E P+ V+++DV G + +L+EVV+ L +P+K+ LG + PK C P
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGP 303
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 34.7 bits (76), Expect = 0.060
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 523 TVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
T+T K + + DV GC E +++ E V L +P+K+ LG + PK P
Sbjct: 307 TITRADKHSKNKIYFKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGP 363
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 565 YSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPK 675
+ V G + + ++EVV PLL+PE F LG+ PP+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPR 754
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648
SK+ + V EKP++ +SDV G + + L+E V P+ P+ F
Sbjct: 112 SKLRAGLNSAIVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFF 158
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 556 DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPP 672
DVT+ D+G ++ + L+E+V PL PE F K + P
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKP 854
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 31.1 bits (67), Expect = 0.73
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + + + A GS + HQPS
Sbjct: 234 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKRIAQSGSMVIMTLHQPS 293
Query: 458 CLLRYQWVRRSLVNRPQTLQTAS 390
L R ++R QT+ + S
Sbjct: 294 YRLLRLLDRLLFLSRGQTVFSGS 316
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPP 672
VT++D+G E E L+E+V PL P+ F K G+ P
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLF-KGGLLKP 447
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 547 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648
E+ +VT+ D+G E E L+E+V PL P+ F
Sbjct: 514 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLF 547
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 547 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648
E+ +VT+ D+G E E L+E+V PL P+ F
Sbjct: 509 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLF 542
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 553 PDVTYSDVGGCKEQIEKLREVVETPLLHPEKF 648
P+V + DVGG ++ + + V+ PLLH + F
Sbjct: 653 PNVKWDDVGGLEDVKTSILDTVQLPLLHKDLF 684
>At2g19780.1 68415.m02311 leucine-rich repeat family protein /
extensin family protein contains leucine rich-repeat
(LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar
to leucine-rich repeat/extensin 1 (GI:13809918)
[Arabidopsis thaliana]; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 402
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 596 ICSLHPPTSLYVT----SGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPSC 456
+C+L +L V+ SGFSS C ++VG F G C G Y QP C
Sbjct: 320 VCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGN-CIPGKGYQRPQPDC 369
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPP 672
V++SD+G + + L+E+V PL PE F K + P
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKP 984
>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 379
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/61 (22%), Positives = 25/61 (40%)
Frame = -3
Query: 489 WYLLRSTPTLMPSSISVGATESCKSTTNFANCFTLIIYFGSFESALMIFVHRATCRGCSF 310
W + T T + + + E CK + + + +Y GS E + +H+ RG
Sbjct: 191 WMEIFDTKTQTWEFLQIPSEEVCKGSEYLSISYQRTVYVGSREKDVTYKMHKGKWRGADI 250
Query: 309 C 307
C
Sbjct: 251 C 251
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPP 672
V++ D+G + E L+E+V PL PE F K + P
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKP 997
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 535 MQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPPKECCFSAP 696
+ EEK VT+ D G + +L+E+V L + E+F GI PK P
Sbjct: 305 ISAEEKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGP 357
>At3g55090.1 68416.m06118 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 720
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + A GS I HQPS
Sbjct: 217 SGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLKRIAESGSIIIMSIHQPS 276
>At2g39350.1 68415.m04830 ABC transporter family protein
Length = 740
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + A GS + HQPS
Sbjct: 235 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGSIVIMSIHQPS 294
>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 235
Score = 28.3 bits (60), Expect = 5.2
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 489 WYLLRSTPTLMPSSISVGATESCKSTTNFANCFTLIIYFGSFESALMIFVHRA-TCRGCS 313
WYLLRS+P ++ S T+ ST N S +L IF A T
Sbjct: 24 WYLLRSSPFNRTTAASTFFTDP-SSTPGGLN--------PSIIKSLPIFTFSAVTALFAM 74
Query: 312 FCSVCLSAARSHKAGGANP 256
CSVCLS + +++G P
Sbjct: 75 ECSVCLSEFKDNESGRVMP 93
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 708
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + A GS + HQPS
Sbjct: 218 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSVVIMSIHQPS 277
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIEPP 672
VT+ D+G + + L+E+V P PE F K + P
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKP 769
>At3g55130.1 68416.m06122 ABC transporter family protein breast
cancer resistance protein 1 BCRP1, Mus musculus,
EMBL:NP_036050
Length = 725
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEGAVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + A GS + HQPS
Sbjct: 226 SGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVIMSIHQPS 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,607
Number of Sequences: 28952
Number of extensions: 282119
Number of successful extensions: 934
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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