Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00727
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    26   0.28 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   1.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.4  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 351 PRVTGLTMLKTCSHSTLKRKRS 416
           P VT    L TC+ +TLK  R+
Sbjct: 244 PAVTATVQLSTCTRTTLKNNRA 265


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 120 LKEWEVIQEEAAKRDHRKIGRE 185
           +K W++ Q E+  R ++K G+E
Sbjct: 396 IKLWDMFQNESLTRLYKKAGKE 417


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 408 KRSL*NR*TVPDIA*CSTTARGRGASC 488
           K  + +R T P ++  S   RG+G  C
Sbjct: 142 KEGICDRSTAPSVSAISRLLRGKGGEC 168


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 475 RPRAVVEHQAMSGTVHR-FQSERFLFNVE*EHVFSIV 368
           R R V+  +A +  + R F+ +R+L   E EH+ SI+
Sbjct: 41  RKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASII 77


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/48 (22%), Positives = 18/48 (37%)
 Frame = -3

Query: 235 WKKHEPGDSSWKKNNSCSLPIFLWSRLAASS*MTSHSFSCFGSGNDIP 92
           W + E    +WK + S     +L      S+    H  S   + + IP
Sbjct: 292 WSRVEMALDNWKNDKSLKRKFYLTICTIMSAAAVEHILSIVNTCSQIP 339


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,866
Number of Sequences: 336
Number of extensions: 3096
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)