Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00727
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813... 116 2e-26
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 77 1e-14
03_02_1038 - 13579407-13579466,13579630-13579739,13579819-135799... 31 0.70
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 31 0.92
09_01_0050 + 853712-855368,855440-856113 28 4.9
08_02_0574 - 18867623-18868033,18869751-18870209 28 4.9
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 28 4.9
02_01_0415 + 3037720-3039849 28 4.9
01_06_0202 + 27483503-27483543,27484567-27485311 28 4.9
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 28 6.5
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 28 6.5
01_06_1151 + 34937738-34937855,34937959-34939244 28 6.5
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 27 8.6
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 27 8.6
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 27 8.6
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 27 8.6
>08_02_0069 -
11880841-11880936,11881150-11881221,11881263-11881343,
11881471-11881542,11882549-11882770,11882849-11882941,
11883509-11883601,11884546-11884632,11884958-11884990,
11885091-11885185,11886590-11886674,11886778-11886864,
11887757-11887846,11887929-11888057,11888668-11888757,
11888849-11888908,11889074-11889311,11889852-11890054
Length = 641
Score = 116 bits (278), Expect = 2e-26
Identities = 46/67 (68%), Positives = 60/67 (89%)
Frame = +2
Query: 308 EVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEKETFALKPMNCPGHCLMFDNRTRSWREL 487
+V++PN+YN +LW+TSGH A+Y ENMF F++EK+ F LKPMNCPGHCLMF++R RS+REL
Sbjct: 270 KVLSPNIYNMQLWETSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFEHRVRSYREL 329
Query: 488 PLRLADF 508
PLR+ADF
Sbjct: 330 PLRMADF 336
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +1
Query: 511 VLHRNELSGALTGLTRVRRFQQDDAHIFC 597
VLHRNELSGALTGLTRVRRFQQDDAHIFC
Sbjct: 338 VLHRNELSGALTGLTRVRRFQQDDAHIFC 366
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 57 GQSGSESLQRVYGISFPEPKQLK 125
G++ ESLQRVYGISFP+ K+LK
Sbjct: 248 GKADRESLQRVYGISFPDSKRLK 270
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +2
Query: 278 KEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFS-FDVEKETFALKPMNCPGHCLM 454
K+ + RG+ + TP++ A+LW+ SGH Y ENM++ DVE E + L+PMNCP H L+
Sbjct: 335 KQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVEDELYQLRPMNCPYHILV 394
Query: 455 FDNRTRSWRELPLRLAD 505
+ + S+R+ P+R+A+
Sbjct: 395 YKRKLHSYRDFPIRVAE 411
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 57 GQSGSESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQELFFFHE-LSPGSCFF 233
G ++ LQR+YG ++ QLK + +EEA +RDHR++G + +LF E G F+
Sbjct: 260 GDESNQMLQRIYGTAWETEDQLKAYIHFKEEAKRRDHRRLGLDLDLFSIQEDAGGGLVFW 319
Query: 234 QPRGAHI 254
P+GA I
Sbjct: 320 HPKGAII 326
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 16/50 (32%)
Frame = +1
Query: 496 VGRLLVLHRNELSGALTGLTRVRRFQ----------------QDDAHIFC 597
V L ++R ELSG+L GL RVR F QDDAHIFC
Sbjct: 409 VAELGTVYRYELSGSLHGLFRVRGFTQISLSTTTTSVSGLFVQDDAHIFC 458
>03_02_1038 -
13579407-13579466,13579630-13579739,13579819-13579916,
13579991-13580077,13580412-13580517,13580946-13581030,
13581139-13581192,13581274-13581423,13581561-13581572
Length = 253
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 173 DWKGTR--VILLPRTVSRLVFLPATWSSHYNTL 265
DW GTR V +PRT+ RLV + + + YN L
Sbjct: 101 DWDGTRNLVSAMPRTIKRLVLVSSIGVTKYNEL 133
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 494 EAATRATTSCGCRTSGNVRDSSSVSKRTFPFQRRMRTCFQHSEPSDPRSATAW 336
E T+CG ++ N+RDSS S +T F+R+M Q + S A +W
Sbjct: 212 EKLANQLTTCGYKS--NLRDSSKASSQTV-FERKMDEKLQQLKQSGRELAVSW 261
>09_01_0050 + 853712-855368,855440-856113
Length = 776
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -1
Query: 597 AEDVRVVLLEAPHAREAGERAAQLVAVQHEKSANRSGNSRHDLVRLSNIR 448
+E RVV + P+A+ G A +L ++H + + SGN+ + V + +R
Sbjct: 74 SEAARVVSVVLPNAQLVGPIARELGLIEHLRHLDLSGNALNGTVPVELLR 123
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 554 VRPVSAPLSSLRCSTRSRPTEAATRATTSCGCRTSGNVRDSSSVSKRTFPFQRRMR 387
V P + P + +T S PT +TRA +C R+S S+S + + F R R
Sbjct: 83 VTPAAIPCAG-SSTTASAPTSTSTRAAPACTGRSSSTGLPSTSGHQGSAAFACRKR 137
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 77 LTARVRYIISRTETAERMGGHSRGGRQA*PQKDWKGTR 190
+ +R+RYI S+TE + R G S A DW G R
Sbjct: 1424 IVSRMRYISSQTERSIRFVGLSTALANARDLADWLGVR 1461
>02_01_0415 + 3037720-3039849
Length = 709
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 164 PQKDWKGTRVILLPRTVSRLVFLPATWSSHYNTLVNFIKEQYRSRGFH 307
P D +GT +L +S LVFL W+ T+ + I + R + FH
Sbjct: 248 PNNDLQGTIDGVLMIKLSNLVFLDLAWNRFSGTIPDSIGKLKRLQEFH 295
>01_06_0202 + 27483503-27483543,27484567-27485311
Length = 261
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 557 RVRPVSAPLSSLRCSTRSRPTEAATRATTSCG 462
R RPV R + R RPT AA R ++S G
Sbjct: 12 RARPVGGVRRERRAAPRRRPTAAAARPSSSHG 43
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 244 PRGWKKHEPGDSSWKKNNSCSLPIFLWSRLAASS 143
PRGW + +SS + S + W R AA S
Sbjct: 465 PRGWSRRRGAESSPQSRGGSSSTLSSWGRTAAFS 498
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +2
Query: 206 RTVSRLVFLPATWSSHYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENM 385
R +SR +F + H++ N E F + N+ ++ L +T A Y N+
Sbjct: 276 RDISRTLFDSMPYDEHFSGYANGFMEPTLHSSFSMIEANNLEDSSLLETYTSEALYTNNL 335
Query: 386 FSFDVEKETFA 418
+ + +FA
Sbjct: 336 SQKEADALSFA 346
>01_06_1151 + 34937738-34937855,34937959-34939244
Length = 467
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 136 SFKRRPPSVTTERLEGNKSYSSSTNCLPARVSSS 237
S++RR +T++ LE + S S+ P+ VSSS
Sbjct: 169 SYRRRASPLTSQELEASSSSMGSSGYQPSGVSSS 202
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 200 LPRTVSRLVFLPATWSSHYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAE 379
LPR ++RL A W SH+ ++ + G++ ++ K W W + A
Sbjct: 557 LPRPLNRLTGFNAFWYSHHCFVI--VYALLIVHGYY------LFLTKDWYKKTTWMYLAV 608
Query: 380 NMFSFDVEKETFALK 424
MF + E+ T AL+
Sbjct: 609 PMFLYACERLTRALR 623
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 596 QKMCASSCWKRRTRVRPVSAPLSSLRCSTRSRPTEAATRATTSCGCR 456
+K CAS CW +R + ++P +R TE A T+ CR
Sbjct: 452 KKECASRCWSQRLK----ASPSQLVRVGPSPTITEGLLTACTADRCR 494
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 385 HVFSIVSPVTRGLPQLGVVHVRGHHFMESSRPVLFFNEIHECVV 254
H S++S + + + HVR H +S VL F+ + CVV
Sbjct: 868 HNLSLLSDLPHSTNRTHICHVRLDHIDVNSLKVLLFHNLCGCVV 911
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 173 DWKGTRVILLPRTVSRLVFLPATWSSH 253
D++ T +LP S LV PA WSSH
Sbjct: 52 DYRPTPGSVLPVAASDLVLGPAQWSSH 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,805
Number of Sequences: 37544
Number of extensions: 382034
Number of successful extensions: 1272
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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