Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00727
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 88 3e-19
SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29) 44 7e-05
SB_23765| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_6324| Best HMM Match : MCM (HMM E-Value=0) 29 3.8
SB_48628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_36747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2) 28 5.0
SB_22131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06) 27 8.7
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 27 8.7
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 27 8.7
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 88.2 bits (209), Expect(2) = 3e-19
Identities = 36/44 (81%), Positives = 41/44 (93%)
Frame = +2
Query: 377 ENMFSFDVEKETFALKPMNCPGHCLMFDNRTRSWRELPLRLADF 508
E+MFSF+VE E +ALKPMNCPGHCLMFD+R RSWRELPLR+ADF
Sbjct: 405 EHMFSFEVENERYALKPMNCPGHCLMFDHRPRSWRELPLRMADF 448
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1
Query: 511 VLHRNELSGALTGLTRVRRFQQDDAHIFC 597
VLHRNELSG L+GLTRVRRFQQDDAHIFC
Sbjct: 450 VLHRNELSGTLSGLTRVRRFQQDDAHIFC 478
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +3
Query: 147 EAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHI 254
E K D ++ ++QELFFFHELSPGSCFF P+GA I
Sbjct: 360 EMKKEDLLEMFKDQELFFFHELSPGSCFFLPKGAVI 395
Score = 24.6 bits (51), Expect(2) = 3e-19
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 254 YNTLVNFIKE 283
YNTL+NFIKE
Sbjct: 396 YNTLINFIKE 405
>SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29)
Length = 314
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1
Query: 514 LHRNELSGALTGLTRVRRFQQDDAHIFC 597
++R E SG L GLTRVR F QDDAHIFC
Sbjct: 30 VYRYEQSGELHGLTRVRGFTQDDAHIFC 57
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 428 MNCPGHCLMFDNRTRSWRELPLRLADF 508
MNCP HC +++ R S+++LP R A+F
Sbjct: 1 MNCPHHCEIYNARPWSYKDLPKRYAEF 27
>SB_23765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -2
Query: 569 KRRTRVRPVSAPLSSLRCSTRSRPTEAATRATTSCGCRTSGNVRDSSSVSKRTFPFQRRM 390
K R +++P + C SRP + A TTS R + R + R P +R
Sbjct: 324 KTREQMQPPQQEEIEMHCPYPSRPAKPAMPTTTSSSSRRNNLQRKPLRMLPRMSPMSQRS 383
Query: 389 RTCFQHSEPSDPRS 348
Q + ++ RS
Sbjct: 384 NARVQEGKAANSRS 397
>SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 643
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 276 LKNNTGLEDSMKW*PRTCTTPSC---GRPRVTGLTMLK 380
LK +GL++ + W P + +TP C RPRV G + L+
Sbjct: 513 LKTQSGLDNDISWRPVSMSTPLCPPVRRPRVFGSSTLE 550
>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 433 LSRTLPDVRQPHEV-VARVAASVGRLLVLHRNELSGALTGLTRVRRFQQDD 582
L +RQP+ + A ++ ++ L + RN GA+TG TRVRR +Q D
Sbjct: 192 LEEVSDSLRQPYSISAANISKALIPLCLSERNS-GGAITG-TRVRREEQSD 240
>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
Length = 1592
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 272 FIKEQYRSRGFHEVVTPNMYNAKLWQ 349
F+ +Q+R R F +TP YN K W+
Sbjct: 97 FLIDQWRWRVFRGEITPQNYNRKWWE 122
>SB_48628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 391 IRR*KGNVRFETDELSRTLPDVRQPHEVVARVAASVGRLLVLHRNELSGALTGLTRVRRF 570
+R+ +VR ++ + LPDVR+ V RV V R+L R L L L VRR
Sbjct: 355 VRQVLPDVRRVLPDVRQVLPDVRRVVPDVRRVVPDVRRVLPDVRQVLPDVLQVLPDVRRV 414
Query: 571 QQD 579
D
Sbjct: 415 LPD 417
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 391 IRR*KGNVRFETDELSRTLPDVRQPHEVVARVAASVGRLL 510
+RR NVR ++ R +PDVR+ V RV +V R++
Sbjct: 266 VRRVVPNVRRVVSDVWRVVPDVRRVAPDVCRVVPNVCRVI 305
>SB_36747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 490 RQLAPRPRAVVEHQAMSGTVHRFQSER 410
RQ RPRA ++ GT HRF +R
Sbjct: 130 RQTTTRPRAWPRQKSYGGTFHRFDRQR 156
>SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2)
Length = 263
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 60 QSGSESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGRE 185
Q ES +R+ E K++++W+V QE+ +K +K+ E
Sbjct: 176 QEKEESERRLEEFREEERKRMEQWKVQQEQESKEREQKLEEE 217
>SB_22131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 334 VVHVRGHHFMESSRPVLFFNEIHECVVM*APRGWKK--HEPGDSSWKKNNSCS 182
++ V H ES V F + + V P WKK +E G++ WK+N CS
Sbjct: 11 IIAVSSAHRKESLEAVSFIIDTLKATV---PI-WKKEIYEQGEAQWKENKECS 59
>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1157
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 551 RPVSAPLSSLRCSTRSRP-TEAATRAT-TSCGCRTSGNVRDSSSVSKRTF 408
+PV P+ C T +RP T A+T AT TS G TS S+S S TF
Sbjct: 822 QPVGEPVFK-PCVTPNRPATIASTSATSTSFGISTSTYQESSNSESASTF 870
>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1301
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 438 GQFIGFKANVSFSTSNENMFSA 373
G F GFKA+V+ +T N+N F +
Sbjct: 634 GDFDGFKASVTTTTDNDNEFGS 655
>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
Length = 1176
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 173 DWKGTRVILLPRTVSRLVFLPATWSSHYNTLVNFIKEQYR 292
D G+ ++ +V+ + W HY + N+ EQYR
Sbjct: 642 DQNGSEEVVRGASVAITEEMKVIWDKHYTDVYNYYYEQYR 681
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = -2
Query: 548 PVSAPLSSLRCSTRSRPTEAA---TRATT-SCGCRTSGNVRDSSSVSKRTFPFQRRMRTC 381
P A L+ +R + T+ T+ T C T+ N+RD V+K + C
Sbjct: 755 PSPAILTHMRSGNQGSSTDVVQGVTKVITRDSSCVTNTNLRDGHHVTKSLGEITADINQC 814
Query: 380 FQHSEPSDPRSATAW 336
H E + R+ W
Sbjct: 815 GVHGEENFTRALAHW 829
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 233 PATWS-SHYNTLVNFI--KEQYRSRGFHEVVTPNMYNAKLWQTSGHW 364
PA+WS S + L ++ + + G+ + PN+ N +++ SG W
Sbjct: 118 PASWSKSQWAGLTTYVLGDDSFYFPGYGHTIGPNVRNPLVYRFSGSW 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,031,148
Number of Sequences: 59808
Number of extensions: 429518
Number of successful extensions: 1319
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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