Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00727
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 373 IVSPVTRGLPQLGVV 329
           ++SPVTRGL + G++
Sbjct: 263 LISPVTRGLVRRGIL 277


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 536 PLSSLRCSTRSRPTEAATRATTSCGCRTSG 447
           P  SL+CS    PT   T A       T+G
Sbjct: 437 PAVSLKCSAAGNPTPQVTWALDGFALPTNG 466


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 536 PLSSLRCSTRSRPTEAATRATTSCGCRTSG 447
           P  SL+CS    PT   T A       T+G
Sbjct: 437 PAVSLKCSAAGNPTPQVTWALDGFALPTNG 466


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 373 IVSPVTRGLPQLGVV 329
           ++SPVTRGL + G++
Sbjct: 263 LISPVTRGLVRRGIL 277


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 436 SRTLPDVRQPHEVVARVAASVGRL 507
           S+ L  V  PH+V        GRL
Sbjct: 162 SQLLKQVEIPHDVAVNATTGKGRL 185


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 436 SRTLPDVRQPHEVVARVAASVGRL 507
           S+ L  V  PH+V        GRL
Sbjct: 162 SQLLKQVEIPHDVAVNATTGKGRL 185


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 436 SRTLPDVRQPHEVVARVAASVGRL 507
           S+ L  V  PH+V        GRL
Sbjct: 162 SQLLKQVEIPHDVAVNATTGKGRL 185


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 477 HDLVRLSNIRQCPGQFIGFKANVSFS 400
           H L+  +  +   G  IG  AN+ F+
Sbjct: 188 HQLISYAGYKNPDGTIIGDPANIEFT 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,397
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)