Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00726
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 288 5e-79
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 288 7e-79
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 288 7e-79
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 163 2e-41
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 155 8e-39
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 89 5e-19
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 47 3e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 47 3e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 40 4e-04
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 40 4e-04
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 35 0.011
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 35 0.011
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.033
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.53
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.0
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 5.0
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 8.7
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.7
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 288 bits (707), Expect = 5e-79
Identities = 137/157 (87%), Positives = 145/157 (92%), Gaps = 1/157 (0%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 220 DKLKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
DKLKAER+ DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 397 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 507
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDT 157
Score = 109 bits (263), Expect = 3e-25
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +3
Query: 519 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 698
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 699 KADGKCLIEALDAILP 746
GK L+EA+D+I P
Sbjct: 220 VVKGKTLLEAIDSIEP 235
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 288 bits (706), Expect = 7e-79
Identities = 136/157 (86%), Positives = 145/157 (92%), Gaps = 1/157 (0%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 220 DKLKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
DKLKAER+ DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 397 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 507
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDT 157
Score = 109 bits (263), Expect = 3e-25
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +3
Query: 519 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 698
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 699 KADGKCLIEALDAILP 746
GK L+EA+D+I P
Sbjct: 220 VVKGKTLLEAIDSIEP 235
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 288 bits (706), Expect = 7e-79
Identities = 136/157 (86%), Positives = 145/157 (92%), Gaps = 1/157 (0%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 220 DKLKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
DKLKAER+ DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 397 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 507
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDT 157
Score = 109 bits (263), Expect = 3e-25
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +3
Query: 519 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 698
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 699 KADGKCLIEALDAILP 746
GK L+EA+D+I P
Sbjct: 220 VVKGKTLLEAIDSIEP 235
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 163 bits (397), Expect = 2e-41
Identities = 76/152 (50%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 231
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 232 AERDWYHN-DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 408
ER+ ++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 409 AGISKNGQTREHALLAFTLGVKQLIVGVNKMD 504
AG + GQTREHA+LA T G+ L+V +NKMD
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMD 387
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 155 bits (375), Expect = 8e-39
Identities = 76/155 (49%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 231
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 232 AERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 408
ER D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 409 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSMN 513
G +NGQTREHA L LG+ +++V VNK+D M+
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +3
Query: 519 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 674
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 89.4 bits (212), Expect = 5e-19
Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 225
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 226 LKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 402
E+ A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 403 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 504
QTREH LLA +GVKQ++V +NK+D
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKVD 180
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 46.8 bits (106), Expect = 3e-06
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 210
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 211 WVLDKLKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 384
+ D D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAISLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 46.8 bits (106), Expect = 3e-06
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 210
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 211 WVLDKLKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 384
+ D D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAISLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 39.9 bits (89), Expect = 4e-04
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 10/159 (6%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIEKFEKEAQEMGKGSFKY--AWVLDKLKA 234
NI + H+DSGK+T T ++Y G I D + + +M + +
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAAT 120
Query: 235 ERDWYH-------NDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 393
W N+ FE S Y + IID PGH DF + D AVL++ A
Sbjct: 121 HCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAV 179
Query: 394 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSM 510
+G I+ + Q R + + + VNKMD M
Sbjct: 180 SGVQSQTITVDRQMRRYNVPRISF--------VNKMDRM 210
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 39.9 bits (89), Expect = 4e-04
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 243
N+ +I H+D+GK+T T ++Y G F + G V+D L AER
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 244 -WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 420
+ A F + +ID PGH DF + + D AV I+ + AG+
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV- 130
Query: 421 KNGQTREHALLAFTLGVKQLIVGVNKMD 504
QT+ A G+ ++I VNKMD
Sbjct: 131 -EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 292 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 471
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 472 KQLIVGVNKMD 504
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 35.1 bits (77), Expect = 0.011
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK--FEKEAQEMGKGSFKYAWVLDKLKAE 237
N VI H+D GKST + ++ G I++ +K E +G A +
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVERRRGITVKAQTCSMIY-- 117
Query: 238 RDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+YH Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 118 --YYHG---------QSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 35.1 bits (77), Expect = 0.011
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKG-SFKYAWVLDKLK 231
N ++ HVD GK+T L+ G I + T+ + E+ +G + K + + K
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 232 AERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
ND K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 81 VISQ---NDE---KRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 274 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 301 IIDAPGHRDFIKNMITGTSQADCAVLIV 384
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 520 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 690
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 691 KKA 699
++
Sbjct: 205 SQS 207
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 304 IDAPGHRDFIKNMITGTSQADCAVLIV 384
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 5.0
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = +1
Query: 382 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYP 561
VA GT E GI NG E+A+ A +I V++ ++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 562 HTSRRLATTQLLSLSCPFL 618
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 253 NDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 390
ND ++K + + + + PGH D I+++ S LI A
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.7
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 490 VNKMDSMNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPF-LDGTETTCWSLQPKCLG 666
+ KMDS+N+ PD K R+K H S + ++L + + ++ L+
Sbjct: 4 IQKMDSLNNKEGQPD--KKRKK--HESEKEGENEVLEIDVTKPVPPSKKLMRKLRKAGKI 59
Query: 667 SRDGRW---SVKKAKLTENASLK 726
+DG W ++++AK E LK
Sbjct: 60 DKDGNWTPEALEEAKKKEEKRLK 82
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 73 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDWYH 252
++ V+S +ST G +D T+E + ++ +G +Y W++ K+ ER Y
Sbjct: 460 LVYRVNSAQSTAAG---LGPVSLDSNTLENVD--VGDLVEGHLQYRWLVAKILKERLGYD 514
Query: 253 N 255
N
Sbjct: 515 N 515
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 226 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 98
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,748
Number of Sequences: 5004
Number of extensions: 68540
Number of successful extensions: 280
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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