Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00726
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 314 6e-86
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 298 3e-81
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 298 3e-81
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 227 5e-60
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 184 4e-47
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 184 4e-47
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 169 2e-42
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 80 2e-15
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 80 2e-15
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 80 2e-15
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 75 5e-14
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 75 5e-14
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 43 3e-04
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 43 3e-04
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 42 4e-04
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 42 6e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 42 6e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 38 0.008
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 38 0.010
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 37 0.013
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 37 0.013
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.12
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.16
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 33 0.28
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.28
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.5
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.5
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.6
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.6
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 29 2.6
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.6
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 314 bits (770), Expect = 6e-86
Identities = 167/237 (70%), Positives = 177/237 (74%), Gaps = 1/237 (0%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
DKLKAER+ DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 397 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRR 576
GEFEAGISKNGQTREHALLA TLGVKQL+ S+ T SPD +SRR
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLV-------SLRSPTRSPD----------SSRR 163
Query: 577 LATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLKLSMPSCH 747
T Q L D TETTC C GSRDG + +K L E S +L PS H
Sbjct: 164 SDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSH 220
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 298 bits (731), Expect = 3e-81
Identities = 143/157 (91%), Positives = 147/157 (93%), Gaps = 1/157 (0%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
DKLKAER+ DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 397 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 507
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDS
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDS 157
Score = 130 bits (315), Expect = 8e-31
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +3
Query: 510 EPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVER 689
EPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VER
Sbjct: 159 EPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVER 218
Query: 690 KEGKADGKCLIEALDAILP 746
KEG A GK L+EALD+I+P
Sbjct: 219 KEGNASGKTLLEALDSIIP 237
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 298 bits (731), Expect = 3e-81
Identities = 143/157 (91%), Positives = 147/157 (93%), Gaps = 1/157 (0%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
DKLKAER+ DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 397 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 507
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDS
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDS 157
Score = 130 bits (315), Expect = 8e-31
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +3
Query: 510 EPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVER 689
EPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VER
Sbjct: 159 EPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVER 218
Query: 690 KEGKADGKCLIEALDAILP 746
KEG A GK L+EALD+I+P
Sbjct: 219 KEGNASGKTLLEALDSIIP 237
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 227 bits (556), Expect = 5e-60
Identities = 107/117 (91%), Positives = 111/117 (94%), Gaps = 1/117 (0%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 387
DKLKAER+ DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 130 bits (315), Expect = 8e-31
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +3
Query: 510 EPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVER 689
EPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VER
Sbjct: 125 EPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVER 184
Query: 690 KEGKADGKCLIEALDAILP 746
KEG A GK L+EALD+I+P
Sbjct: 185 KEGNASGKTLLEALDSIIP 203
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 184 bits (449), Expect = 4e-47
Identities = 88/156 (56%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Frame = +1
Query: 49 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 228
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 229 KAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 405
+ ER+ DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 406 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSMN 513
E G GQT+EHALL +LGV QLIV VNK+D+++
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD 322
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 519 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 695
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY--------- 370
Query: 696 GKADGKCLIEALDAIL 743
DG CL+E +D+ +
Sbjct: 371 ---DGPCLLELIDSFV 383
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 184 bits (449), Expect = 4e-47
Identities = 88/156 (56%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Frame = +1
Query: 49 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 228
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 229 KAERD-WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 405
+ ER+ DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 406 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSMN 513
E G GQT+EHALL +LGV QLIV VNK+D+++
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD 340
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 519 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 695
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY--------- 388
Query: 696 GKADGKCLIEALDAIL 743
DG CL+E +D+ +
Sbjct: 389 ---DGPCLLELIDSFV 401
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 169 bits (410), Expect = 2e-42
Identities = 78/155 (50%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Frame = +1
Query: 43 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 222
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 223 KLKAERDWYHN-DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
ER+ ++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 400 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 504
EFE G + GQTREH++L T GVK L++ VNKMD
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMD 258
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 519 YSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 695
+ E RF+EI+ +++ +++K+G+NP + +VP SG G + + T W
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY----- 316
Query: 696 GKADGKCLIEALDAILP 746
G C IE +D +LP
Sbjct: 317 ---SGPCFIEFIDVLLP 330
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAER 240
DKLK +
Sbjct: 61 DKLKVTK 67
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 79.8 bits (188), Expect = 2e-15
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 217 LDKLKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
L+ +ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 105 LE-----------------YETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 147
Query: 397 GEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSM 510
G QTREH LLA +GV ++V +NK+D +
Sbjct: 148 GPMP-------QTREHLLLARQVGVPLDNIVVFMNKVDEV 180
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 79.8 bits (188), Expect = 2e-15
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 217 LDKLKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
L+ +ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 106 LE-----------------YETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 148
Query: 397 GEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSM 510
G QTREH LLA +GV ++V +NK+D +
Sbjct: 149 GPMP-------QTREHLLLARQVGVPLDNIVVFMNKVDEV 181
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 79.8 bits (188), Expect = 2e-15
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 217 LDKLKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 396
L+ +ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 106 LE-----------------YETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 148
Query: 397 GEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSM 510
G QTREH LLA +GV ++V +NK+D +
Sbjct: 149 GPMP-------QTREHLLLARQVGVPLDNIVVFMNKVDEV 181
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 74.9 bits (176), Expect = 5e-14
Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 231
K ++N+ IGH+D GK+T T + K+ K K E+ KG K +
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQA---KKGFAKHIK-FDEIDKG---------KEE 89
Query: 232 AERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 411
+R N +A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 90 KKRGITIN-VAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME- 147
Query: 412 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYP-HTSRRLATT 588
QT+EH +LA +GVK + + +NK D + + ++R H AT
Sbjct: 148 ------QTKEHLILAKQVGVKNMAIFINKADLVEEDDLDLVEMEARELLSLHGFNGDATP 201
Query: 589 QLLSLSCPFLDGTETTC 639
+ + L+G + +C
Sbjct: 202 VIRGSALSALEGQDISC 218
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 74.9 bits (176), Expect = 5e-14
Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 231
K ++N+ IGH+D GK+T T + K+ K K E+ KG K +
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQA---KKGFAKHIK-FDEIDKG---------KEE 89
Query: 232 AERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 411
+R N +A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 90 KKRGITIN-VAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME- 147
Query: 412 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYP-HTSRRLATT 588
QT+EH +LA +GVK + + +NK D + + ++R H AT
Sbjct: 148 ------QTKEHLILAKQVGVKNMAIFINKADLVEEDDLDLVEMEARELLSLHGFNGDATP 201
Query: 589 QLLSLSCPFLDGTETTC 639
+ + L+G + +C
Sbjct: 202 VIRGSALSALEGQDISC 218
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 474
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 475 QLIVGVNKMDSMNHHTVSPDLRKSRR 552
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 61 INIVVIGHVDSGKSTTT 111
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 42.7 bits (96), Expect = 3e-04
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 192
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 193 GSFKYAWVLDK-----LKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 357
+ + L+K +K E + ++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 358 QADCAVLIVAAGTG 399
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 42.3 bits (95), Expect = 4e-04
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 192
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 193 GSFKYAWVLDK-----LKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 357
+ + L+K +K E + ++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 358 QADCAVLIVAAGTG 399
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 41.9 bits (94), Expect = 5e-04
Identities = 42/147 (28%), Positives = 62/147 (42%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 243
N ++ HVD GKST L+ CG + + +K E +G +KA+
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERERGI--------TVKAQT- 94
Query: 244 WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 423
AL Y + +ID PGH DF + + D +L+VAA G
Sbjct: 95 -----AAL---RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------V 139
Query: 424 NGQTREHALLAFTLGVKQLIVGVNKMD 504
QT + LAF + Q+I +NK+D
Sbjct: 140 QAQTIANFWLAFEKNI-QIIPVINKID 165
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 41.5 bits (93), Expect = 6e-04
Identities = 29/73 (39%), Positives = 34/73 (46%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 474
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 475 QLIVGVNKMDSMN 513
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 41.5 bits (93), Expect = 6e-04
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Frame = +1
Query: 16 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 186
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 187 GK----GSFKYAWVLDKLKAERDWYHNDIALWKFETS--KYYVTIIDAPGHRDFIKNMIT 348
G+ G+ + + + HN W S VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAKLVTFIDLAGHEKYLKTTIF 245
Query: 349 GTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 504
G + D +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 246 GMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 291
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 39.9 bits (89), Expect = 0.002
Identities = 47/169 (27%), Positives = 65/169 (38%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 243
NI + H+DSGK+T T ++Y G ID + GK L+ +R
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM--------HEVRGKDDVGATMDFMDLERQRG 97
Query: 244 WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 423
A + + + IID PGH DF + D AVL++ G G G+
Sbjct: 98 ITIQSAATY-VDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQS 151
Query: 424 NGQTREHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTS 570
T L + + I VNKMD N T L R K H +
Sbjct: 152 QTFTVNRQLARYNV---PFICFVNKMD-RNGATPLKALDGLRNKLNHNA 196
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 37.9 bits (84), Expect = 0.008
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 243
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ER+
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 244 -WYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 37.5 bits (83), Expect = 0.010
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 12/175 (6%)
Frame = +1
Query: 16 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 186
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 187 GK----GSFKYAWVLDKLKAERDWYHNDIALWKFETS--KYYVTIIDAPGHRDFIKNMIT 348
G+ G+ + + + HN W S VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAKLVTFIDLAGHEIYLKTTIF 245
Query: 349 GTSQ---ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 504
G + + +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 246 GMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 292
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 142 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDWYHNDIALWKFETSKYYVTIIDAPGH 321
+KR ++ EKE + F Y LDK+K ERD Y +++ K + + + DA H
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNSGYDAFHH 331
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 142 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDWYHNDIALWKFETSKYYVTIIDAPGH 321
+KR ++ EKE + F Y LDK+K ERD Y +++ K + + + DA H
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNSGYDAFHH 266
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 292 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 471
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 472 KQLIVGVNKMD 504
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 497 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 369
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 32.7 bits (71), Expect = 0.28
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 8/172 (4%)
Frame = +1
Query: 13 QFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC----GGIDKRTIEKFEKEAQ 180
+ ++R P+ ++ + + V+G D GKST G L C G + I +F E +
Sbjct: 154 EVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIFRFPHEVR 212
Query: 181 EMGKGSFKYAWVL--DKLKAERDWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGT 354
GK S V+ D ++ N + ++SK VT+ID G + K I G
Sbjct: 213 -TGKTSSVCNDVIGFDNRGKLVNYAQNSLEEMVEKSSK-LVTLIDLAGDAKYQKTTIHGL 270
Query: 355 S--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 504
+ A L+VAA + GI+ TREH L L + ++ + KMD
Sbjct: 271 TGYTPHFACLVVAA-----DRGIT--WATREHLGLIAALNIPMFVL-ITKMD 314
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.7 bits (71), Expect = 0.28
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Frame = +1
Query: 67 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAER 240
I V+GHVD+GK+ I + +++ E Q++G + ++ + R
Sbjct: 487 ICVLGHVDTGKTKMLDT-------IRRTNVQQGEAGGITQQIGATEVPAEAIKERCRQVR 539
Query: 241 DWYHNDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 420
+ + + + F IID PGH F G+S D A+L+V + G+
Sbjct: 540 GFLQDQMKIPGF-------LIIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLE 587
Query: 421 KNGQTREHALLAFTLGVKQLIVGVNKMDSMNHHTVSP 531
QT E +L G ++ +NK+D + + +P
Sbjct: 588 P--QTIE-SLKLLIKGKTPFVIALNKIDRLYEYESNP 621
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 280 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 280 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 559 PHTSRRLATTQLLSLSCPFLD 621
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 559 PHTSRRLATTQLLSLSCPFLD 621
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 345 DHVLDEISVSRSINDGNIVLASFELPESNIVVIPVTLSL*FVQYPSIFEGSFTHF 181
DH+ EIS S N + + S + SN P T ++ +Y F+GSF+ F
Sbjct: 49 DHITYEISTSPPSNSFDQISDSIRILLSNQSSCPETCTVTLNRYIDTFQGSFSIF 103
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 559 PHTSRRLATTQLLSLSCPFLD 621
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 559 PHTSRRLATTQLLSLSCPFLD 621
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 61 INIVVIGHVDSGKSTTT 111
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 295 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 390
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,854,942
Number of Sequences: 27780
Number of extensions: 389646
Number of successful extensions: 1313
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -