Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00725
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   9.7  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   9.7  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 164 GTESGARPSFITTGRW--SESNSETT 93
           G    ARP  +TT RW  + ++S TT
Sbjct: 40  GRRRAARPGVVTTPRWGCARASSATT 65


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 330 KQFVAEDFLHRFKLSDDIRELLR 398
           K  VAE ++  F++ ++ +ELL+
Sbjct: 122 KDLVAEAYVSPFRIDNESQELLK 144


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 644 DDDEKAELLADTLQTQCT 697
           D  E    LAD LQT C+
Sbjct: 57  DGQELKNNLADALQTSCS 74


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 644 DDDEKAELLADTLQTQCT 697
           D  E    LAD LQT C+
Sbjct: 57  DGQELKNNLADALQTSCS 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,516
Number of Sequences: 336
Number of extensions: 3174
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)