Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00725
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           34   0.13 
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    31   1.2  
09_06_0115 + 20944586-20945185                                         29   2.7  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    29   4.7  
02_03_0229 + 16617371-16617970                                         28   6.2  
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347...    28   8.3  

>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 407 RLDTRLRQVSYRGKSYSNACPTTRRKVSHHRSP-RARWSDFLEGLAPSQRSYYRLARTLK 583
           RL ++ R +S  G + +   PT     +  R P R RWS  +  L P  +SY+ +  +  
Sbjct: 44  RLASQARLLSGGGGAVAQQPPTQHAIAAQRRLPSRNRWSRIIPSLLPDGKSYHIIDTSFT 103

Query: 584 SDTV-VTMPP 610
           S+ V V  PP
Sbjct: 104 SEEVFVPAPP 113


>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 515 WSDFLEGLAPSQ--RSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELL 670
           WS+ L  +  S   +S +RLAR L S  +  +P  V PSG    F   EKA LL
Sbjct: 572 WSEQLVSVQTSTCIKSKFRLARLL-SFRLYNVPMDVSPSGICGPFKQPEKANLL 624


>09_06_0115 + 20944586-20945185
          Length = 199

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 223 PPSLPFNPDSIRLLRIPLKP*TS*RHTSP 309
           PP LPF PD+ RL+R+ L+  +S    SP
Sbjct: 34  PPPLPFLPDNPRLVRLHLRTTSSPPRPSP 62


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 210 QADAQRVPIHHSPRDGNG-IGSATELHNDGT 121
           Q   + +P+H  PRDG G  G   E H+ GT
Sbjct: 212 QCKEEPLPLHEPPRDGGGSAGEEEEEHDVGT 242


>02_03_0229 + 16617371-16617970
          Length = 199

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 223 PPSLPFNPDSIRLLRIPLKP*TS*RHTSP 309
           PP LPF PD+ RL+R+ L+  +S    +P
Sbjct: 34  PPPLPFLPDNPRLVRLHLRTPSSPPRPTP 62


>11_01_0448 -
           3469398-3469676,3470015-3470284,3470386-3470476,
           3470581-3470690,3470867-3471136,3471768-3471914
          Length = 388

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 515 WSDFLEGLAPSQRSYYRL-ARTLKSDTVVTMPPLVGPS 625
           W   L+GLA  + +YY+  AR  K  TVV++P   GPS
Sbjct: 152 WCQGLDGLASREAAYYQQGARFAKWRTVVSIPN--GPS 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,000,178
Number of Sequences: 37544
Number of extensions: 389082
Number of successful extensions: 1167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)