Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00725
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26435| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_33404| Best HMM Match : ShTK (HMM E-Value=2.1e-10)                  31   1.2  
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_26435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 91  EVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIR 258
           +V+   + D   V+ +LGR    V + + + +W  L        P S  FNP  +R
Sbjct: 49  KVIDHFNKDRATVIQQLGRGFGQVEIHKALENWVPLSYDDLSQFPGSEDFNPPLVR 104


>SB_33404| Best HMM Match : ShTK (HMM E-Value=2.1e-10)
          Length = 251

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 269 YR*SHRHLNVTHHLDIR*VIETICSGGLPSPLQIVRRY*GT 391
           Y+ +H H+N  +H D+R V    C   L   L ++ RY  T
Sbjct: 124 YKLNHTHVNCVYHSDVR-VKSDTCEANLIMSLDVILRYTNT 163


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 279 LQRYPEETDRVRVKRERWWIRFSQADAQRVPIHHSPRDG 163
           L  YP+E    +  R RW    S AD   VP+  + R+G
Sbjct: 720 LSNYPDEEWPTQGARSRWNNNSSGADLDMVPVRDNSRNG 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,357,001
Number of Sequences: 59808
Number of extensions: 428839
Number of successful extensions: 1205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)