Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00725
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    31   0.80 
U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
           protein 1 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 511 GSRTSVMRDFTSRCRARIRIRFSAVGYLS*ARIEAFLALRSSLI 380
           G+  +V  D +SR    IRI F   GY+S A IE +L  +S ++
Sbjct: 236 GNSKTVKNDNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVL 279


>U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical
           protein T05A7.6 protein.
          Length = 758

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 527 RNQTIWLSDFGDARLYVAL*GTHSNTIFRGRIPVVGAYR 411
           R  T+++ DFG A+LYV   G H   I R ++  +G  R
Sbjct: 585 REDTVYMLDFGIAKLYVDENGVHK--IKRKKVKFLGTLR 621


>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 527 RNQTIWLSDFGDARLYVAL*GTHSNTIFRGRIPVVGAYR 411
           R  T+++ DFG A+LYV   G H   + R ++  +G  R
Sbjct: 579 REDTVYMLDFGIAKLYVDENGEHK--VKRKKVKFLGTLR 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,743
Number of Sequences: 27780
Number of extensions: 304175
Number of successful extensions: 910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)