Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00725
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 161 TESGARPSFITTGRWSESNSETTSIE 84
           T++G  P+F+T   W E  + T S+E
Sbjct: 502 TQTGTGPAFLTIKEWIERGT-TKSME 526


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 654 KKQSCWPIHCKPSARQ 701
           +K +C P+HCKP   Q
Sbjct: 343 RKNNC-PLHCKPELGQ 357


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 243 VKRERWWIR 217
           +KR+RWW R
Sbjct: 40  IKRKRWWSR 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 435 PTAENRIRMRALQRDVKSRI 494
           PT   + RMRAL  D  SR+
Sbjct: 388 PTPAQKARMRALNIDRVSRV 407


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 18  KYRASPGYTRHSVIKKRNSALTLD 89
           K+  +PGYT   VIK+       D
Sbjct: 213 KFYGTPGYTAPEVIKQNRPTPAAD 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,407
Number of Sequences: 438
Number of extensions: 4302
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)