Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00725
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB...    30   1.3  
At2g40660.1 68415.m05017 tRNA-binding region domain-containing p...    29   3.9  
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...    28   5.2  
At2g23520.1 68415.m02807 expressed protein ; expression supporte...    28   5.2  

>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 515

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 363 FKLSDDI-RELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEV 503
           F+L ++  R +L+A   +     R+   +N +RMR + ++VKSR+ E+
Sbjct: 229 FELQEEQGRRVLKALELAFIPGMRFLPTKNNLRMRQINKEVKSRLREI 276


>At2g40660.1 68415.m05017 tRNA-binding region domain-containing
           protein similar to SP|Q12904 Multisynthetase complex
           auxiliary component p43 [Contains: Endothelial-monocyte
           activating polypeptide II (EMAP-II) (Small inducible
           cytokine subfamily E member 1)] {Homo sapiens}; contains
           Pfam profile PF01588: Putative tRNA binding domain
          Length = 389

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 452 YSNACPTTRRKVSHHRSPRARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVG 619
           YSN    + ++VS   +   +W DF EG +   + ++     L  + + T   L+G
Sbjct: 37  YSNVLKASGKEVSAQNNDVLKWLDFAEGFSSDSKDWFSALEKLNLE-LATKSVLLG 91


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 4   THYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMK--LGRAPDSVPVTRT 177
           T + +   +RPDI+D ALL+    RL  +  +   D D R  + K  L ++P +  V  T
Sbjct: 619 TVFIIGATNRPDIIDSALLR--PGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVT 676

Query: 178 VVDWHTLGISLAE 216
            +  +T G S A+
Sbjct: 677 ALAKYTQGFSGAD 689


>At2g23520.1 68415.m02807 expressed protein ; expression supported
           by MPSS
          Length = 862

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 363 FKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRA 467
           F+  DDI ELL A N  +  Y ++ T+E   ++R+
Sbjct: 104 FESEDDIPELLEAFNKFLTMYPKFETSEKVDQLRS 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,627,668
Number of Sequences: 28952
Number of extensions: 290475
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)