Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00724
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 73 6e-14
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 30 0.32
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 1.3
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.7
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 27 3.9
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 26 5.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 5.2
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 26 6.9
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.1
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 72.5 bits (170), Expect = 6e-14
Identities = 34/88 (38%), Positives = 55/88 (62%)
Frame = +2
Query: 245 FPNFRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPE 424
+ ++++ +Q+ KI +L+ + +EHK+V++TL ++ R+CFRM GVLVERTV V+P
Sbjct: 15 YNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPI 74
Query: 425 LISNYEQLPKAIQSLEDQLTQKGEEINK 508
L + E + A+ L DQ Q E K
Sbjct: 75 LKTTQEGIQTAMNGLLDQYKQLEAEFQK 102
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 30.3 bits (65), Expect = 0.32
Identities = 27/96 (28%), Positives = 44/96 (45%)
Frame = +2
Query: 272 QLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLP 451
+L +KI+E + NEHK + +RG GG L E+ AE+ EL N
Sbjct: 20 ELDAKINEAKKRFNEHKEKLGAIRG-----------GGSLQEKN-AELRAEL-DNIRNAQ 66
Query: 452 KAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMP 559
AI+S + L K + ++ L+ + +T+P
Sbjct: 67 AAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTVP 102
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 203 IKSRKKNE*GNLCWFPNFRNEQRQLGSKISELQMELNEHKIVIETLR 343
+K +++ L N +NE+R+L K++E + L+ ++ TLR
Sbjct: 629 VKRKEEQLNAQLSQLENLQNEERKLQEKVNEHESLLSRTNDILSTLR 675
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 654 SVLTVRLVLHLPKA--V*GSTGKLFIINNTITVWLDK 758
S+LT ++L LPKA V S GK+ + + + +WL K
Sbjct: 281 SILTKEILLELPKASDVAKSIGKMILTSMFVPLWLLK 317
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 275 LGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVE 397
L SKI E + +LN K+ ETLR E T+ + G + VE
Sbjct: 82 LESKIGEQERDLNNEKLASETLR--EKTQLLEKENGALKVE 120
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 564 HLQSNPPLPSLMC*LLAVNYTDPFIS--YSCRSVLTVRLVL 680
HL SN LP +C LLA D F S Y VL RL L
Sbjct: 100 HLMSNYNLPETLCFLLAGFVGDLFASVVYVPSEVLKTRLQL 140
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 251 NFRNEQRQLGSKISELQMELNEHKIVIETL 340
+ +N+ + +++ ELQ +LN+ K IETL
Sbjct: 803 DLKNKLSEESTRLQELQSQLNQDKNQIETL 832
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 305 PFVILIFYSLIDVVHYESLETSKDFLIRFFSYF*CIFSHFTL 180
PFV+ I Y + ++ + D + RFFS+ IFS +T+
Sbjct: 352 PFVLAILYFYLQLLFPDE---KLDAIHRFFSFILHIFSKYTI 390
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 417 NTSATVRSTSTPPNIRKHLRVNSTP 343
+T +V++TSTP N+R +N P
Sbjct: 567 STVESVKATSTPLNVRPKYNINYPP 591
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 428 ISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFA-SNVADRTMPEPPPEQSTSTKSNV 601
IS YE+ + +Q+ QL + E +NK L N + + T +P + T++K++V
Sbjct: 1678 ISVYEKKTRDLQNKITQLEETIENLNKQLSNPEKTDESTSSVTETKPVTSKPTASKADV 1736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,385
Number of Sequences: 5004
Number of extensions: 62802
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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