Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00724
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0365 + 18045340-18045783                                         86   3e-17
11_06_0122 + 20333025-20333468                                         85   4e-17
08_01_0516 - 4499797-4499949,4500040-4500617,4500699-4500756,450...    31   1.3  
04_04_0884 + 29084341-29084590,29084670-29084800,29084890-290851...    30   1.8  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           28   7.2  

>12_02_0365 + 18045340-18045783
          Length = 147

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 39/88 (44%), Positives = 61/88 (69%)
 Frame = +2

Query: 245 FPNFRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPE 424
           + N R+E  QL SKI+EL+ME++EH +VI  +  ++ +R+C+RM GGVLVERT+ EVLP 
Sbjct: 22  YANMRSEMNQLYSKITELEMEVSEHSLVIGAIEPLDPSRRCYRMIGGVLVERTIKEVLPA 81

Query: 425 LISNYEQLPKAIQSLEDQLTQKGEEINK 508
           +  N E L + +  + + L +K +EI +
Sbjct: 82  VQRNKEGLEEVVARMNEALEKKKKEITE 109


>11_06_0122 + 20333025-20333468
          Length = 147

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 45/121 (37%), Positives = 69/121 (57%)
 Frame = +2

Query: 245 FPNFRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPE 424
           + N R+E  QL +KI+EL+ME++EH +VI  +  ++ +R+C+RM GGVLVERT+ EVLP 
Sbjct: 22  YGNMRSEMTQLYTKITELEMEVSEHSLVIGAIEPLDHSRRCYRMVGGVLVERTIREVLPA 81

Query: 425 LISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMPEPPPEQSTSTKSNVL 604
           +  N E L + I  + + L +K +EI +           AD    E    +   +   VL
Sbjct: 82  VHRNKEGLEEVIARMHEALEKKKKEITEFELKYKIRIRKADSNADEEEGSKKEGSAQGVL 141

Query: 605 V 607
           V
Sbjct: 142 V 142


>08_01_0516 -
           4499797-4499949,4500040-4500617,4500699-4500756,
           4500855-4500932,4501032-4501091,4501219-4501332,
           4501436-4501594
          Length = 399

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +2

Query: 431 SNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVA-----DRTMPEPPPEQSTSTKS 595
           ++ + L +  + LED L+Q  +++ +TL + + A  V      D + P PPPE+   + S
Sbjct: 262 ADVQGLQQKARHLEDALSQGMDKLKQTLADSLLAEAVVVSTSCDASPPPPPPEEEEPSSS 321


>04_04_0884 +
           29084341-29084590,29084670-29084800,29084890-29085132,
           29085223-29085481,29085597-29085832
          Length = 372

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 772 HQPAHLSSHTVIVLLIIKSFPVLPHT 695
           H P   S   V+ LL+ +S P LPHT
Sbjct: 5   HPPCRSSLFLVVTLLVFRSSPALPHT 30


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +2

Query: 272 QLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLP 451
           +L  K+ E++MEL   + VIE L    LT K  +  G +   R +A  + +++  Y    
Sbjct: 40  ELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIK--GWIAEVRKLAYHVEDVMDKYSY-- 95

Query: 452 KAIQSLEDQLTQK 490
            A+Q  E+   +K
Sbjct: 96  HALQMEEEGFLKK 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,221,524
Number of Sequences: 37544
Number of extensions: 399931
Number of successful extensions: 1180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)