Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00724
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30825| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_41451| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)                  31   1.4  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        30   1.8  
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     30   2.4  
SB_51970| Best HMM Match : LacAB_rpiB (HMM E-Value=9.7)                30   2.4  
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             30   2.4  
SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_35700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_33673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)         28   7.3  
SB_25429| Best HMM Match : Beta-lactamase (HMM E-Value=0.0076)         28   9.6  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_30825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/59 (55%), Positives = 43/59 (72%)
 Frame = +2

Query: 245 FPNFRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLP 421
           F   R E   + +K+ EL+M+ +EH IVIE L+ V+ +RKCFRM GGVLVERTV +VLP
Sbjct: 211 FNQLRQEYTNIITKVHELEMDQSEHSIVIEALKEVDASRKCFRMIGGVLVERTVGDVLP 269


>SB_41451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 398 RTVAEVLPELI--SNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMPEPPP 571
           RTVAE + EL+  SN +   K   S+ D+LT+K  E N+   N   +S + D+   E   
Sbjct: 37  RTVAEYIRELLQLSNEQGYEKIRPSIRDELTEKARE-NEAF-NKFISSLIKDKQQSEEES 94

Query: 572 EQS 580
           +QS
Sbjct: 95  QQS 97


>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
          Length = 440

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = +2

Query: 263 EQRQLGSKISELQMELNEHK--IVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISN 436
           E   + S I  LQ ++ + K  +  ET    EL  KC +      VE+ ++E   +  + 
Sbjct: 261 EVEGMQSTIMTLQQQIKDIKQRLATETTTSQELRTKCHQ------VEKCLSEAKEQNATL 314

Query: 437 YEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMPEPPPEQSTST 589
              L    Q LE + T+  E +     N+       ++T P PPP ++ +T
Sbjct: 315 SLSLQ---QRLESKDTKDDEPMEIEPPNVTKPDRTTEQTQPSPPPPETVTT 362


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = +2

Query: 260 NEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFR-MFGGVLVERTVAEVLPELISN 436
           N+ +   S + E ++    +  ++E +    +T K  + MF  +L++    +   +L S+
Sbjct: 143 NDNKDKSSTVKEDKITTENNDNLLERIEQELITIKQEKEMFEEMLLQEK--QKSKDLASS 200

Query: 437 YEQLPKAIQSLEDQLTQKGEEINKTLRNMI 526
            E L    ++L+D+L  K EEI K LR M+
Sbjct: 201 EENLQNLNKTLQDELNSKNEEIGK-LRPML 229


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 197 KYIKSRKKNE*GNLCWFPNFRNEQRQL 277
           K  +SRKK + GN+ W+ N+ + Q +L
Sbjct: 586 KRYRSRKKRQGGNMVWYNNYNSYQNKL 612


>SB_51970| Best HMM Match : LacAB_rpiB (HMM E-Value=9.7)
          Length = 347

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 27/100 (27%), Positives = 45/100 (45%)
 Frame = +2

Query: 305 ELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLT 484
           +L +HKI+++ LRG +L     R     L  RT    + ++ S+   +   I     Q T
Sbjct: 247 DLIDHKILLDKLRGYDLHPCIVRWIAAFLEGRTQFVKILDVSSSLHAINLGI----PQGT 302

Query: 485 QKGEEINKTLRNMIFASNVADRTMPEPPPEQSTSTKSNVL 604
           + G  +   + + + A  V D T+ E  P  S S  + VL
Sbjct: 303 KLGPILFTVMVDDLIAKFVDDLTILEIVPRNSPSNNNMVL 342


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = +2

Query: 422 ELISNYEQLPKA---IQSLEDQLTQKGEEINKTLRNMI----FASNVADRTMPEPPPEQS 580
           +++S ++Q P     I  +E +L    ++++K    +     F + + ++ +P+PPP+ S
Sbjct: 82  KMVSAFQQNPAMGVDIDKVEQELADNAQQLDKVGEELFKYQSFLAALENKPVPDPPPKYS 141

Query: 581 TS 586
           TS
Sbjct: 142 TS 143


>SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 452 KAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMPEPPPEQSTS 586
           +A QS  DQ+ Q   E+ + LR    AS       PEP  E+  S
Sbjct: 155 QAAQSFGDQMQQTNPELFEQLRTQAQASMGTSTNTPEPTNEEKES 199


>SB_35700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 389 LVERTVAEVLPELISNYEQLPKAIQSLE--DQLTQKGEEINK 508
           L++R     LPE++ ++E  PK  +SLE  D++  K  EI+K
Sbjct: 536 LLQRRAPNALPEVLKDWEWAPKWTRSLEPHDKVITKVCEISK 577


>SB_33673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 407 LRCVRQARPQTSGNTYGSTPLPAKSQLRSYVRLTPFVIL 291
           L CV +  P+  G+ +G  P P      S + LTP +++
Sbjct: 158 LACVSRVCPEGGGSLWGQEPTPTYVMKMSSLWLTPLLVI 196


>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 419 PELISNYEQLPKAIQSLEDQLTQKGE 496
           PELI  YE+  KA    +D  ++KGE
Sbjct: 68  PELIEEYEKKKKASSKRKDSTSEKGE 93


>SB_25429| Best HMM Match : Beta-lactamase (HMM E-Value=0.0076)
          Length = 149

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = +2

Query: 257 RNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISN 436
           ++ + QLG+++  ++++LN  K + + +   EL      M      + T A +L   I  
Sbjct: 7   KDAEDQLGARVGYIELDLNSEKHLTDGMTVRELCSAAITM-----SDNTAANLLLTTIGG 61

Query: 437 YEQLPKAIQSLEDQLTQKGE---EINKTLRNMIFASNVADRTMP 559
            ++L   + ++ D +T+      E+N+ + N     +  D TMP
Sbjct: 62  PKELTAFLHNMGDHVTRLDRWEPELNEAIPN-----DERDTTMP 100


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 431 SNYEQLPKAIQSLEDQLTQKG-EEINKTLRNMIFASNVADRTMPEPPPEQS 580
           S+ E +P  +  +E+     G EE+N T +N   +SN   + M  P P+ S
Sbjct: 255 SHTESVPNHVVKVEESEFFFGAEEVNDTAKNTAGSSNHDRQEMESPKPDSS 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,055,105
Number of Sequences: 59808
Number of extensions: 434049
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)